| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0266 |
|---|
| Symbol | yajR |
|---|
| ID | 4184030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 322881 |
|---|
| End bp | 324098 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638070276 |
|---|
| Product | tetracycline resistance protein |
|---|
| Protein accession | YP_676898 |
|---|
| Protein GI | 110636691 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.968173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAC ATAAAAAAGC CGGGCTCGGG TTTGTTTTTG TAACCTTATT AATAGATGTA
ATCGGCATCG GCATTATTCT GCCGGTTATT CCGGATCTGA TCAAAGACCT TACCGGCGAA
GGGTTGAGTG AGGCTGCTAA ATACAGCGGC TGGTTAACGT TTGCCTATGC CATTATGCAA
TTCTTCTTTT CACCTGTTCT CGGCGCCTTA AGTGATACGT ATGGCAGACG TCCGATACTG
TTGCTGTCTT TACTTGGCTT GGGCTTTGAT TATATCTTCT CTGCCTTTGC GCCAACCATC
GGTTGGTTGT TTGTCGGCCG TATCCTTGCA GGTATCAGCG GTGCCAGTTT TACAACCGCC
ACGGCGTATA TTGCAGATAT CAGTACACCT GAAAACCGCA CGCAGAATTT CGGACTCGTT
GGTGTCGCTT TTGGTCTTGG TTTTATTATT GGTCCTGTAG TTGGCGGCAT TACCGGTGAT
TGGTGGGGCC CACGCGCACC GTTTATGGTT GCTGCTGTAT TTACTTTATT AAATGTACTG
TACGGATATT TCTTTGTGCC CGAATCGTTG GCACAGGAAA ACAGGCGAAA ATTCGAATGG
TCACGTGCAA ATCCGATCGG TTCTTTGCTG CACTTAAAAA AATATCCCGT AGTGGCAGGG
TTGATTGTTT CCATGTTTTT GTTTTTTATT GCAGGTCATT CCGTTCAATC AAACTGGTCA
TTTTTCACGG AATACAGATT TAATTGGGAT AATAAAATGG TTGGGTATTC ATTGGGTTTT
GTAGGTGTGA TTATAGCTGT TGTACAAGGC TGGCTGATAC GCATTATTAT TCCTAAGACT
GGCCAGAAGT GGGCGGTTTA TCTGGGACTT TCATTGAATG CGTTAGGTTT GTTGTTGTTT
GCATTTGCAT CACAGGGCTG GATGATGTTT GCCATACTGG CGCCATATGC ATTAGGCGGT
ATTGCAGGTC CGGCGCTTCA GGGAATCACA TCTGCGCAGG TGCCGGCAAC AGAGCAGGGC
GAACTGCAAG GTGCACTAAC CTCGCTGATG AGTGTAACAA CAATTATAGG ACCGCTGTTG
ATGAATAATT TGTTTTCGTA TTTCACAGGA GCAAACGCTC CCATTGAATT ACCCGGAGCT
CCGTTTTTAG CAGGAGCAGT AATGGTTGGC GTTAGTGTAT ACCTGAGTGT ACAAACATTG
AGAAAATATG AAGGCTAA
|
|---|
| Protein sequence | MTSHKKAGLG FVFVTLLIDV IGIGIILPVI PDLIKDLTGE GLSEAAKYSG WLTFAYAIMQ
FFFSPVLGAL SDTYGRRPIL LLSLLGLGFD YIFSAFAPTI GWLFVGRILA GISGASFTTA
TAYIADISTP ENRTQNFGLV GVAFGLGFII GPVVGGITGD WWGPRAPFMV AAVFTLLNVL
YGYFFVPESL AQENRRKFEW SRANPIGSLL HLKKYPVVAG LIVSMFLFFI AGHSVQSNWS
FFTEYRFNWD NKMVGYSLGF VGVIIAVVQG WLIRIIIPKT GQKWAVYLGL SLNALGLLLF
AFASQGWMMF AILAPYALGG IAGPALQGIT SAQVPATEQG ELQGALTSLM SVTTIIGPLL
MNNLFSYFTG ANAPIELPGA PFLAGAVMVG VSVYLSVQTL RKYEG
|
|---|
| |