| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0195 |
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| Symbol | rsbU |
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| ID | 4185574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 238283 |
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| End bp | 240334 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638070204 |
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| Product | sigma factor sigB regulation protein |
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| Protein accession | YP_676827 |
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| Protein GI | 110636620 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACTTAA AGAACTTACG AAATATATAT TTTCTTTTGG CATTCGTCAG CTGGGTCTTG
ATCCTGGCTG ACGATATTAC TGTAATTAGG CTAGCTCAAC CAATTATACC GTCATACTTT
TCTGATATTT TAGTTAATAC ATTCTTAAGT ACTTTTTTCT TATTTACTTT CCTGGGGTTT
AAAATTGAAA TCGGCCTGAA ACGAAGCGGC AATTTCAATG ACCTGCTGTG GCAGGTATTT
ATTATAGGCG CCATCACGGT TCTTATTTCT CTGATCATAA AATCAATCGG CATATTCAGC
AACAACGATT TTTTTATTTA TGATCCGCTG GTATCAAACA TTCTATATCA CATAAACATT
GGTATCATTA CCATCTTCCT CGCTAATGGC TATTATGTCT GGAAGAAAAT GATCCTATAC
CAAAAGACAA AACGCACAGA TGTTATCTGG CATATATTTG AGTACCTCAC ACTCATAAGC
ATTGTCAGTA ATTTCTTTTT CTTTGACATT ACTGATCCCT ATTTTCTGAT CTTCACTTCC
CCGATTACTA TACTGGGTTT GATCTGCGCC TTTAACCTTA AATGGGTTGC CTTCTTAACG
TATAAGCAAA AATGGAGAAG CATTTTACTG CTTAGTTTAA TTATTATTAT CAGCCTTTCT
TTCCTGGAAA GAGTCTATGC ACACCACATT ATCAGCAACT TATTGATCGA TCTTGCCGAA
AATGTATTCA TACAGGCCAT ATTCGGTTTC ATGCTCATGA ATTGTATTGT CGCCTTGCTG
GTATTATTAT TCAACCTTCC CACTTCTTCT GTATTTGAAC AGAAATTTGG CGAAGTAATG
CTCTTTCAGA AATTACATCA ATCCCTTCAG GTTGGGGAGA AAGAAGAAGA TATGTATGAA
CTGCTTATCA GCAGCAGTAT GACTACGGTT ATGGCCGATG CGGCCTGGCT GGAAATCAGA
GATAATAAAG GCGGCTTAAA AGCGTTTCAA AATAGTAACA TTGACGAGTA CGATGTTTTT
GAAATAAAAA AGGCACTCCG TAAAAATCAG GTTAATATTT CTTCGGAACC GCAATACATT
AAAGACATTT TAAGTTACCC CCATACAGAA AAAATAAAAC ACTTAGATTA TAAATCGTTT
CTGTTAATAC CGCTTACATC CAACAATCAA TTGATTGGTA CATTGGTATT ATTGAAAAAT
TTAAACGATG GCTTCGACAA AGAAATGGTT GATATCATTT TTACGTTTGT GAGCCAGGCC
TCCATCTCGA TTAAAAACTT CCGTCTTATG TCGGATGCCA TACAGACAGA GCGTTACCAG
GAGGAATTAA AAATTGCCAA GGATGTGCAG CAAAGTCTTC TGCCTGCTTC TTTGTACTTA
AATAATGCGG TTCAATTAAG CGTTTATTCT AAAGGAGCAA AAGAAGTTGG AGGTGATTAC
TATGATGTGT ATGAATTATC ACCGACACGG TTTGCAATCG TAATCGGTGA CGTTTCCGGT
CATGGAACAA GTGCCGCTTT CAACATGGCG CAAATGAAAG GCGTATTCCA GAGTTTGGTT
AGCCTGGACT TGCCTGTTGA TGAATTTATG GTGCTGGCAA ACAATGCGCT GGGAAGATGT
CTGGAAAGAA AGAGTTTTAT TACGCTTAGT TTATTTGTCC TCAATACCGA AACACAAAGC
ATTCAATATG CACGTGCGGG ACACTGCCCG GCAATACTTA TTGACAGTAA AAACAATGAA
GCCTTATTCC TCGATGGTAA AGGATTAGGT TTAGGTTTAA GCAGAAATAA TACCTACGAA
AAACACATAA ATAAATACGA ATTGTCTTAT TCAAGCAATG ACGTTTTAAT TTTATATACA
GATGGTTTGG TTGAGGCCCA CAACCTCGCC AGAGATGAAT ATGGCTATGA ACGGCTAAAA
CAGATGGGGC TGGAAAGCAG TGCAGACAAG CCGAGACAGA TTATTGACAC CATCATTGAG
AATGTTCAGC ACTTTAGCGG AAGCACTCAA TTTGAAGATG ACTGTACATT ACTTGTTATG
AAATTTAGCT AA
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| Protein sequence | MNLKNLRNIY FLLAFVSWVL ILADDITVIR LAQPIIPSYF SDILVNTFLS TFFLFTFLGF
KIEIGLKRSG NFNDLLWQVF IIGAITVLIS LIIKSIGIFS NNDFFIYDPL VSNILYHINI
GIITIFLANG YYVWKKMILY QKTKRTDVIW HIFEYLTLIS IVSNFFFFDI TDPYFLIFTS
PITILGLICA FNLKWVAFLT YKQKWRSILL LSLIIIISLS FLERVYAHHI ISNLLIDLAE
NVFIQAIFGF MLMNCIVALL VLLFNLPTSS VFEQKFGEVM LFQKLHQSLQ VGEKEEDMYE
LLISSSMTTV MADAAWLEIR DNKGGLKAFQ NSNIDEYDVF EIKKALRKNQ VNISSEPQYI
KDILSYPHTE KIKHLDYKSF LLIPLTSNNQ LIGTLVLLKN LNDGFDKEMV DIIFTFVSQA
SISIKNFRLM SDAIQTERYQ EELKIAKDVQ QSLLPASLYL NNAVQLSVYS KGAKEVGGDY
YDVYELSPTR FAIVIGDVSG HGTSAAFNMA QMKGVFQSLV SLDLPVDEFM VLANNALGRC
LERKSFITLS LFVLNTETQS IQYARAGHCP AILIDSKNNE ALFLDGKGLG LGLSRNNTYE
KHINKYELSY SSNDVLILYT DGLVEAHNLA RDEYGYERLK QMGLESSADK PRQIIDTIIE
NVQHFSGSTQ FEDDCTLLVM KFS
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