| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0143 |
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| Symbol | rluB |
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| ID | 4183576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 172481 |
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| End bp | 174169 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638070146 |
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| Product | pseudouridylate synthase (ribosomal large subunit pseudouridine synthase B) |
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| Protein accession | YP_676776 |
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| Protein GI | 110636569 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.303983 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAC AGAGAACGAA TAATAACAAG AGGCCCGCGA ATAGCAGGCC TGCTTCGTCT
AAAGGCAGAT CGAATTCAGC AGAAGGCGGT CGTGGCCCTA AAAAATCATC AAATACAAGA
TCAACATCAT CTCGCAGTGA AGAGGGGCGT TCATCACGTT CCGGCTTTGA TAAAAAGACT
TCATCAAAAA GACCATCTTC ATCATCAAGA GGTGGTTCTG AAAGAGGACC GAAAGAAGAA
AAGGATCTGT ACGGTTCAAA GAGAACAACA CAATCCAGAG CGAAGAAATT TGAAACATCT
AAAAGAGCTG TAGGGAGAGG CCCATCCGGC CGTAAACCCG CTAAAAAATC ATACACCGAT
AAAGATGAAT CGTTTATCCC ATATGATAAA CGTTCAGAAG ATACAAAAAG CCCTTACATA
AAAAGAGGCA TTGCGCAGTC AGGTGAAGAC AGGCGCCCAC AACCAGATAG AGGAGTAGAA
AGGCGTCCAG CTAAACGTTC GGATTCAAGA GGCGGTGATG ACAGAAGTCC TGCAAAACGT
TCTTACACAA AAAGAGGAGA AGGTTCTGCT GAATACAAAA GCAGAGCTGG AGAAGGACGT
TCTTCTGCAC CTAAAAAAAC ATTTGGTCCG AAACGTGAAG ATGATTCAAG AAGCGGGCGC
GGACCGGCAG CGAAGTTTCC TAACAAACGC ACCTCCGGTT CAAGAGAAGA ATCCGGCGAC
TTCAAGCGTA AGCCAACTAC AAGAAGATCA TTCGATGCAG ACGAAAAGGA AAGTAAGCCA
CGCGGCAGAA AAGAACTATC AAACGATGAC TTTGACGCAG ATTTCGATGC TGATTTTTCA
GACGAAGACC GCAATAAAAA AGACAAACCT AAATTTGATA AGGATCAGGT AAAAAAAGGA
CGGAAGGCCT ACGAAAACAA ACTGGATAAA CTTAGTAAAC CTAAGCCGAA TGCAGTAAAG
GTAAGTGCTC CGGATTCATT CGAGATTCGT TTAAATAAAT ATATATCAAA TTCAGGTATA
TGTTCGCGCC GCGAGGCCGA TCAGCTTATT ATAGAAGGTA CTGTAAAGGT AAACGGCATT
GTGGTAACAG AACTTGGTTA TAAAGTTAAA CCAGGCGATT CAGTTAAATA CAATAACAAA
GTATTGAATC CGGAAAAATC CGTATATGTA TTGTTGAACA AACCGAAAGA TTTCATCACT
ACTATGGAGG ATGAGAACGA TCGCAAGACA GTAATGCAGC TGGTTGCAAA CGCTACCAAA
GAGCGTATCT ACCCGGTTGG AAGGCTGGAT AGAAACACAA CAGGTTTACT GTTGTTTACC
AATGACGGTG AGCTTGCACA GAAACTTACA CACCCATCAA ACAAAGTAAA AAAAATCTAC
GAAGTGGAAT TGGACAAACC AATCACGGCA GAAGATTTCG ATAAAATTGT AGACGGCAAA
ATCCATTTAT TTGATGGTCC GGTAAAAGTA GACGAAGCAG CTATCATTTC TCCGAGCAAA
AAAATAATCG GCATTGAAAT ACATGAAGGC AGGAACAGGA TTGTTCGCCG CATTTTTGAA
TCATTAGGAT ACGATGTATT AAAACTGGAC CGGGTAATGT ATGCCGGTTT AACAAAGAAA
AATATTCCAA GAGGCTCCTG GAGGTATTTG ACAGCAACAG AAGTAAATAA AATTAAATAC
TTAGACTAA
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| Protein sequence | MSKQRTNNNK RPANSRPASS KGRSNSAEGG RGPKKSSNTR STSSRSEEGR SSRSGFDKKT
SSKRPSSSSR GGSERGPKEE KDLYGSKRTT QSRAKKFETS KRAVGRGPSG RKPAKKSYTD
KDESFIPYDK RSEDTKSPYI KRGIAQSGED RRPQPDRGVE RRPAKRSDSR GGDDRSPAKR
SYTKRGEGSA EYKSRAGEGR SSAPKKTFGP KREDDSRSGR GPAAKFPNKR TSGSREESGD
FKRKPTTRRS FDADEKESKP RGRKELSNDD FDADFDADFS DEDRNKKDKP KFDKDQVKKG
RKAYENKLDK LSKPKPNAVK VSAPDSFEIR LNKYISNSGI CSRREADQLI IEGTVKVNGI
VVTELGYKVK PGDSVKYNNK VLNPEKSVYV LLNKPKDFIT TMEDENDRKT VMQLVANATK
ERIYPVGRLD RNTTGLLLFT NDGELAQKLT HPSNKVKKIY EVELDKPITA EDFDKIVDGK
IHLFDGPVKV DEAAIISPSK KIIGIEIHEG RNRIVRRIFE SLGYDVLKLD RVMYAGLTKK
NIPRGSWRYL TATEVNKIKY LD
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