| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0125 |
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| Symbol | pal |
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| ID | 4184066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 148784 |
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| End bp | 150754 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638070128 |
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| Product | outer membrane protein, peptidoglycan-associated lipoprotein |
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| Protein accession | YP_676758 |
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| Protein GI | 110636551 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.40578 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAGGT TAATTCAGGC AATTTTTATC TTGGGGTTCG CAGCTTTTGT TGCTTGTACT
CCTAAAAGTG CAAAGTCTTT TGCTAAAGCT GAAGTTCAAT ATAAGCAGGC TGAATATCAG
CACGCAATTG AAAACTATCA GCAGTCTTTA AGTGAAGGTG GTGATGTGGC ACAGTGTAAC
TATTATATCG CTGAAAGTTA CAGACGCTCA AACCGTATAC AGGAAGCGGA ACCATTTTAT
AAGAAAGCAA TTGAAGCAGG TATAAAAGAT GAAGAAGCCC ACTTTTTTTA TGCGAATGCA
TTAAAATCAG TAGGCAATTA CGAAGGCGCT GCAACACAAT ACAAACAATA CATTAAGACA
GGTTCTAATT TCGATTACAT TAACAGAGCA AAAAAAGAAC TAGAGAATCT TAAAGCGTTG
CAGGAAGTAG TAGAAAAAGA AACGTATTAC AAGGTTGAAA ATATTGGACA GATTAACTCA
CCGGAAGCAG AATATGCCCC ATACATCTAT AAGAATCAAC TTTACTTTAC AAGTTCAAGA
GATGCTGAAA AAATGCACGC TGCTACAGGA ACTGGTTTTA CAAACATTCA CGAATATGTA
TTTGACGGTG TAGAAAAGTT TTCGGGACAG TCTGTACCAT TGTCTAATGC TATTAATACA
GACGGTGCAC ACGAAGCTTC CTGTATCCTA ACAAAAGATG GCAAAACAAT GATTTTTGCA
AGAGGTAACA GCGGCGCCAA AAAAGGTCCT CAGGACGTTG ATTTATTTAA AACAACGTTA
CAGTCAGATG GCAAATGGAG TGAGCCGGTT ATGCTTGCAA TAAATGATCC GGCTGCATGG
GATGCTTGTC CTGCATTATC TTTAGATGAA AAAACGCTTT ACTTTGCTTC AAACAGAGAA
GCAGAAGGCG CATTGGGGAA CGTTGATATT TACAAAGCTA CATTAGATGA AAAAGGAGAA
TGGTCTAACC CGGTAAACAT TGGTGCGCCA ATCAATACAC GTGGCAATGA TATGTATCCG
TCATTCAATA AAGATGGTAA GTTTTATTTC GCATCAGACG GCCACCCATC TTTAGGTTCT
TTGGATATTT TCTACGTAGA TCCTAAAGAA AGTAAAATTG TAAATATGGG CAAGCCAATT
AATACAAGTT ATGATGACTT TGGATTAGTT TGGAAAGATA GCTTAGAAGG CTACTTCGCA
TCAAATAGAA TTGATAATGG TGCAAAAGGT GATGATGATA TTTATTTTGT AAGAAATACA
TTCTGGGATA GAAGAGCAAA GTACTATGTT GACGGTACAT CATTCGCAAA ATCTAAAAAG
AACCCGAAAG CAATCCTTCC GAATTCAATT ATCTATTTGT TAAGCTGCAA AGGAGATACA
TTGAAATCAA TCGTGTCTGA CACAGAAGGA AAATTTGAAT TCGAATTAAA ACCGGATACA
TGTTATTATT TAGCAGCTCA TTCAGACAAA TACTTTGCAA TGCCTAAATC TGAATGGACT
CCAGTTAAAA TAGCAACGGT GCCTATTAAA GATCTTGACA TCGGAGATAA TTCAATTAAG
AAAAAAGCCG AAGTTATGTT AGTGAAAAAG GAGCGTATCG TTATTGTTCG TAATATCTTA
TACGATTATG ACAAATGGGA TATTCGTCCG GATGCTGCAG TTGAACTTGA CACAATGGTT
ATGCTGATGA ATGCGAACCC GGAAATTCAG ATTGAATTAG GTTCTCACAC CGATGAGCGT
GGTTCTGCTG AATACAACAG AGTATTGGCA CAGAAACGTG CACAGGCAGC GGTTGATTAC
ATTATTGCAC ACGGCATTTC TAAAGACAGA ATTATTGCAA AAGGATATGG CGAAGATGAA
CCTGCAATCA GAAATGCAAA AACAGAGGCT GATCACCAAA CAAACCGTCG TACAACATTT
AAAGTGTTAA ACCATTTTAG CGACGAATTA GAAATAAAAT CAGGAGAATA A
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| Protein sequence | MTRLIQAIFI LGFAAFVACT PKSAKSFAKA EVQYKQAEYQ HAIENYQQSL SEGGDVAQCN
YYIAESYRRS NRIQEAEPFY KKAIEAGIKD EEAHFFYANA LKSVGNYEGA ATQYKQYIKT
GSNFDYINRA KKELENLKAL QEVVEKETYY KVENIGQINS PEAEYAPYIY KNQLYFTSSR
DAEKMHAATG TGFTNIHEYV FDGVEKFSGQ SVPLSNAINT DGAHEASCIL TKDGKTMIFA
RGNSGAKKGP QDVDLFKTTL QSDGKWSEPV MLAINDPAAW DACPALSLDE KTLYFASNRE
AEGALGNVDI YKATLDEKGE WSNPVNIGAP INTRGNDMYP SFNKDGKFYF ASDGHPSLGS
LDIFYVDPKE SKIVNMGKPI NTSYDDFGLV WKDSLEGYFA SNRIDNGAKG DDDIYFVRNT
FWDRRAKYYV DGTSFAKSKK NPKAILPNSI IYLLSCKGDT LKSIVSDTEG KFEFELKPDT
CYYLAAHSDK YFAMPKSEWT PVKIATVPIK DLDIGDNSIK KKAEVMLVKK ERIVIVRNIL
YDYDKWDIRP DAAVELDTMV MLMNANPEIQ IELGSHTDER GSAEYNRVLA QKRAQAAVDY
IIAHGISKDR IIAKGYGEDE PAIRNAKTEA DHQTNRRTTF KVLNHFSDEL EIKSGE
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