Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0118 |
Symbol | rimM |
ID | 4185948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 143104 |
End bp | 143658 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638070120 |
Product | 16S rRNA processing protein RimM |
Protein accession | YP_676751 |
Protein GI | 110636544 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.561423 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCGG CAGATAACAT CCTTTGGGGA AATATTATCA AGGTTCATGG TGTAAAAGGA GAGGTATTAG TTCAGGTATT TTCTGATGAC CTTACTGATT ACGAAACATT GGAATCTGTT TTTGTTGAAA TAAAACAAAA ACAGATTCCT TTTTTTTTAA GCACATTTAA TTTTGCTACT CAAAAACGGT GTATACTTTC TTTTGAAGAC GTTACTACTG TTGAGCAGGC AAAACCACTT GTTGGAGCAG ACATTTACAT ACCAGTATCC AAAATGGCAG AAGCCGACGA AAGTCGACTG TCATATCAGG CAATCATTGG CTTTGAAGTA ATGGATACCA TTCAGGGGAA ATTGGGTGTC ATTTCTAATT TCTTTCAGAA AACCGGCCAG GACTTATTAA TGATGGATTA CCAGGATGCC GAAATTTTAA TACCGGTAAC AGAAGAAATT GTACATTCCG TAGATGTTAA AACAAAGCAG GTAATTACAA CCTTACCTGA AGGATTGATT GAAATTTATC TGAACGAAGA CGCCTCAGAA CCCGATGCGG ATTGA
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Protein sequence | MNPADNILWG NIIKVHGVKG EVLVQVFSDD LTDYETLESV FVEIKQKQIP FFLSTFNFAT QKRCILSFED VTTVEQAKPL VGADIYIPVS KMAEADESRL SYQAIIGFEV MDTIQGKLGV ISNFFQKTGQ DLLMMDYQDA EILIPVTEEI VHSVDVKTKQ VITTLPEGLI EIYLNEDASE PDAD
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