Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0094 |
Symbol | dnaE |
ID | 4186003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 110266 |
End bp | 113850 |
Gene Length | 3585 bp |
Protein Length | 1194 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638070094 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_676728 |
Protein GI | 110636521 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.866734 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0038584 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCTGATT TCGCACATTT ACATGTCCAT TCACAGTTTT CTTTATTAGA TGGTGCTGCC AGCATAAAAG GTCTGGTTGG CAAAGCGGTT AAAAATGAAA TGAAAGCTCT TGCGCTTACA GATCATGGAA ACATGCATGG CATTTTTCAA TTTGTTGCCG AAGCGGTTAA AAATAACATC AAGCCAATTG TTGGTTGTGA ATTCTATCTT GTTGAGGATC GTTTTAAGAA GAACTTTACG AAAGACAATA AAGATGTCCG TTATCACCAG TTACTATTAG CAAAAAACCC GGAAGGATAT AAAAATCTGA TCAAGCTTTG TTCTCTAGGC TACATCGAAG GTCAGTATGG AAAGTACCCG CGTATTGATA AAGAACTTAT ACTGCAGTAT CACAAAGGTT TGATTGCGAC TACGTGTTGC CTGGGAGCTG AAGTGCCGAG AACAATTCTG GCTAAAGGTG AAGAGGCTGG TGAAAAGGCT TTCAAATGGT GGCTGGATTT ATTTGGTGAA GACTATTATG TAGAGCTGCA GCGCCACGAT ATCAAAGAAC AGAATATTGT AAACGAAGTG CTGATCAAGC TTGCACGTAA GTATCAGGTA CCAATTATTG CTTCGAACGA TTCGCATTAT GTGGATCAGA AAGATTCGAA CGCGCACGAC ATTCTTTTAT GTATCAATAC CGGTGAAAAG CAAAGCACCC CGACCATGAA AGATTTTTCG GATGATGAAT CGATGATGAA GGGTCGTCGC TTTGCATTTG CGAACGATCA GTTTTATTTC AAAACGAAAG AGGAAATGTC AACGCTATTC AGCGACATTC CCGAAGCGAT CGACAATACG ATGCAGATTG TTGACAAAGT AGAAATACTG AAGCTGAAGC AAGACATCCT TTTGCCTAAT TATGAAATCC CTTCAACATT TTTAGACCAG GATAATTATT TACAGCATTT AACATACGAA GGTGCCCGCA ACCGATACGT TGATGTAACA CCAGAAATTA AAGAGCGACT GGATTTTGAA TTACATACCA TCCGCACGAT GGGCTTTGCC GGCTACTTTC TGATCGTGCA GGATTTCATT AACAAAGGCC GCGAGATCGG TGTGTTAATC GGGCCTGGCC GTGGTTCAGC TGCCGGCTCT GCTGTTGCAT ATTGTATTGG TATCACCAAC ATTGACCCTA TTAAATATAA TCTCCTGTTT GAGCGTTTCC TGAATCCGGA TCGTAAGAGC ATGCCCGATA TTGATACAGA CTTTGACGAC GAAGGCCGTC AGAAAGTGAT TGATTATGTG GTAGAGAAAT ATGGCAAAAA ACAAGTAGCG CAGATTGTAA CCTATGGTAC AATGGCAGCG AAGATGAGTA TTAAGGATGT GGCGCGTGTA CTGGATCTTC CGTTACAGGA ATCAAATGCG CTGGCCAAAC TTGTACCCGA CAAACCAGGC ATTGAATTGA ACTGGGTAAT GAAAGGCCCG ATGAAGGCGT CGGATAAAAA GAACGAAAAA GACAAAACGC TTACAGAAGA ACTAACGCCG GAAGATATAG AGAATGTAAA GAAGCTTCGT GAAATGCTGG ATGACGAAGG CACACTTGCT TCTGACGTAT TGAAGGAGGC ATTGATATTG GAAGGCTCTG TACGCGGCAC GGGTATTCAC GCGGCAGGTA TCATCATTGC GCCAAAAGAC CTGTATGATA TTATCCCCGT ATTCACCGCA AAGGATTCGG AGTTGTTGGT TACACAGTTT GACGGCAAAG TAATTGAAGA TGCAGGTGTA ATCAAGATGG ACTTTTTGGG TTTGAAAACC CTTACCATCA TTCGTGATGC GTTAAAAATG ATTGAAGAAA ACCACGGTAT AAAAATCGAT ATCGATTATA TTCCGCTGGA TGATGCGAAG ACATTTGAAT TGTACCAGAA AGGTGAAACA AACGCGACGT TCCAGTTTGA ATCGGCGGGG ATGCAAAAAC ACCTCATCAA TTTAAAACCG GATAAGTTTG AGGATTTGAT TGCGATGAAC GCCCTATACA GACCGGGCCC GATCGAATAC ATTCCTAAAT TCATTCAGCG TAAACTGGGC AAAGAAGAGA TTGTGTACGA CTTGCCGGAA ATGGAAGAAT ACCTTGGTGA TACGTATGGC ATTACCGTTT ACCAGGAACA GGTAATGCTT TTGTCTCAGA AGCTGGCTGG CTTTACAAAA GGGGATGCCG ATGTACTGCG TAAGGCAATG GGTAAAAAAG ACCGTGCCAC GCTGGATAAA ATGAAAGGCA AATTTATTGA AGGTGCGGTA GCAAAAGGAC TTGATCCGAA AGTATGTGAA AAAGTATGGA CCGACTGGGA AGCCTTTGCT CAATACGCGT TTAACAAATC GCACTCTACC TGTTATGCGT TTGTAGCGTA TCAGACGGGT TATTTAAAAG CAAATTATCC TTCTGAATAT ATGGCGTCTG TGTTGACGCA TAACTTAAGC AACTTTGATA AGATCTCTTT CTTTATGGAA GAGTGCCAGC GTATGGGCAT GGCGGTTCTT GGGCCGGATG TAAATGAAAG TAGTTACCAG TTTTCTGTTA ACAGCAACGG GCAGATCCGT TTCGGGATGG GCGCCATTAA AGGTGTGGGA GAAGGCCCGG TGCAGGCGAT TGTTGATGAA CGCAAGGCAA ACGGACCATT CAAGGATTTC TTTGATTTTG TTTCCAGAGT TAATCTCCGT GCGGTAAGTA AAAAAACATT TGAATCGCTT GCCCTTGCCG GCGCACTGGA TTATTTCACC GAACTGCACC GTGCACAGTA TTTCAATGTA GCGGAACGTG AAACCATCAC ATTCCTTGAA AAAGCGATCC GTTACGGAAA TGCTTTTCAG ACGGAAGATG ACAGCAATCA ATCGTCGCTG TTTGGCGATA GTTCAAGTGC GAAACCTGCG CCGCCTAAAA TCACGCCTTG CGAGGAATGG GGAAATATTG AAAAACTGAA AAAAGAAAAA GAGATTGTTG GTTTCTATAT TTCCGGTCAT CCGCTGGATC AGTTCAAACT GGAGATCGAC AATTTCTGTA ATTGTCCGTT GGAGAATGTC ATGAGCAGTC CGCAGGGTAA AGACCTTACT GTAGCGGGTA TTGTTACGAA AGTAAATGTA CGCCAGAGCA AAAACGGAAA ACCATTTGTA CTCTTTACAA TTGAAGATTA CAGCGGCTCG CTTGATCTGG CTTTATTTGG CGAAGATTAT CTGAAACACG CGCATTTTAT CAATATTGGC GAATTCCTGT TTATGAAAGG CAGTTTGAAG CCTAAATGGG GCCGTGAAGG GGAATTAGAC TTTAAAATCA CCACTACGCA GCTATTGGCA GATGTACGTG CTAAATTATG TAAAAGCGTT AATATAAGTG TTAATCTGGA CCAGATCAAT GCTATTACCG TTGTTGAAAT TGACAGGATC GTTTCGGAGC ATAAAGGCAG CTGTTTGCTC TATTTAACAC TGACTAAAAA TACAAACGAG CATACAGTAA AAACATTCTC ACGTAGTTAC AGAGTTGACC CGAATAACGT ATTTCTTAGC GAGTTGAACA AACTGGAAGG CATCTCGTAC AAAATAGGTG CCTAA
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Protein sequence | MPDFAHLHVH SQFSLLDGAA SIKGLVGKAV KNEMKALALT DHGNMHGIFQ FVAEAVKNNI KPIVGCEFYL VEDRFKKNFT KDNKDVRYHQ LLLAKNPEGY KNLIKLCSLG YIEGQYGKYP RIDKELILQY HKGLIATTCC LGAEVPRTIL AKGEEAGEKA FKWWLDLFGE DYYVELQRHD IKEQNIVNEV LIKLARKYQV PIIASNDSHY VDQKDSNAHD ILLCINTGEK QSTPTMKDFS DDESMMKGRR FAFANDQFYF KTKEEMSTLF SDIPEAIDNT MQIVDKVEIL KLKQDILLPN YEIPSTFLDQ DNYLQHLTYE GARNRYVDVT PEIKERLDFE LHTIRTMGFA GYFLIVQDFI NKGREIGVLI GPGRGSAAGS AVAYCIGITN IDPIKYNLLF ERFLNPDRKS MPDIDTDFDD EGRQKVIDYV VEKYGKKQVA QIVTYGTMAA KMSIKDVARV LDLPLQESNA LAKLVPDKPG IELNWVMKGP MKASDKKNEK DKTLTEELTP EDIENVKKLR EMLDDEGTLA SDVLKEALIL EGSVRGTGIH AAGIIIAPKD LYDIIPVFTA KDSELLVTQF DGKVIEDAGV IKMDFLGLKT LTIIRDALKM IEENHGIKID IDYIPLDDAK TFELYQKGET NATFQFESAG MQKHLINLKP DKFEDLIAMN ALYRPGPIEY IPKFIQRKLG KEEIVYDLPE MEEYLGDTYG ITVYQEQVML LSQKLAGFTK GDADVLRKAM GKKDRATLDK MKGKFIEGAV AKGLDPKVCE KVWTDWEAFA QYAFNKSHST CYAFVAYQTG YLKANYPSEY MASVLTHNLS NFDKISFFME ECQRMGMAVL GPDVNESSYQ FSVNSNGQIR FGMGAIKGVG EGPVQAIVDE RKANGPFKDF FDFVSRVNLR AVSKKTFESL ALAGALDYFT ELHRAQYFNV AERETITFLE KAIRYGNAFQ TEDDSNQSSL FGDSSSAKPA PPKITPCEEW GNIEKLKKEK EIVGFYISGH PLDQFKLEID NFCNCPLENV MSSPQGKDLT VAGIVTKVNV RQSKNGKPFV LFTIEDYSGS LDLALFGEDY LKHAHFINIG EFLFMKGSLK PKWGREGELD FKITTTQLLA DVRAKLCKSV NISVNLDQIN AITVVEIDRI VSEHKGSCLL YLTLTKNTNE HTVKTFSRSY RVDPNNVFLS ELNKLEGISY KIGA
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