Gene CHU_0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0094 
SymboldnaE 
ID4186003 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp110266 
End bp113850 
Gene Length3585 bp 
Protein Length1194 aa 
Translation table11 
GC content42% 
IMG OID638070094 
ProductDNA polymerase III, alpha subunit 
Protein accessionYP_676728 
Protein GI110636521 
COG category[L] Replication, recombination and repair 
COG ID[COG0587] DNA polymerase III, alpha subunit 
TIGRFAM ID[TIGR00594] DNA-directed DNA polymerase III (polc) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.866734 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0038584 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCTGATT TCGCACATTT ACATGTCCAT TCACAGTTTT CTTTATTAGA TGGTGCTGCC 
AGCATAAAAG GTCTGGTTGG CAAAGCGGTT AAAAATGAAA TGAAAGCTCT TGCGCTTACA
GATCATGGAA ACATGCATGG CATTTTTCAA TTTGTTGCCG AAGCGGTTAA AAATAACATC
AAGCCAATTG TTGGTTGTGA ATTCTATCTT GTTGAGGATC GTTTTAAGAA GAACTTTACG
AAAGACAATA AAGATGTCCG TTATCACCAG TTACTATTAG CAAAAAACCC GGAAGGATAT
AAAAATCTGA TCAAGCTTTG TTCTCTAGGC TACATCGAAG GTCAGTATGG AAAGTACCCG
CGTATTGATA AAGAACTTAT ACTGCAGTAT CACAAAGGTT TGATTGCGAC TACGTGTTGC
CTGGGAGCTG AAGTGCCGAG AACAATTCTG GCTAAAGGTG AAGAGGCTGG TGAAAAGGCT
TTCAAATGGT GGCTGGATTT ATTTGGTGAA GACTATTATG TAGAGCTGCA GCGCCACGAT
ATCAAAGAAC AGAATATTGT AAACGAAGTG CTGATCAAGC TTGCACGTAA GTATCAGGTA
CCAATTATTG CTTCGAACGA TTCGCATTAT GTGGATCAGA AAGATTCGAA CGCGCACGAC
ATTCTTTTAT GTATCAATAC CGGTGAAAAG CAAAGCACCC CGACCATGAA AGATTTTTCG
GATGATGAAT CGATGATGAA GGGTCGTCGC TTTGCATTTG CGAACGATCA GTTTTATTTC
AAAACGAAAG AGGAAATGTC AACGCTATTC AGCGACATTC CCGAAGCGAT CGACAATACG
ATGCAGATTG TTGACAAAGT AGAAATACTG AAGCTGAAGC AAGACATCCT TTTGCCTAAT
TATGAAATCC CTTCAACATT TTTAGACCAG GATAATTATT TACAGCATTT AACATACGAA
GGTGCCCGCA ACCGATACGT TGATGTAACA CCAGAAATTA AAGAGCGACT GGATTTTGAA
TTACATACCA TCCGCACGAT GGGCTTTGCC GGCTACTTTC TGATCGTGCA GGATTTCATT
AACAAAGGCC GCGAGATCGG TGTGTTAATC GGGCCTGGCC GTGGTTCAGC TGCCGGCTCT
GCTGTTGCAT ATTGTATTGG TATCACCAAC ATTGACCCTA TTAAATATAA TCTCCTGTTT
GAGCGTTTCC TGAATCCGGA TCGTAAGAGC ATGCCCGATA TTGATACAGA CTTTGACGAC
GAAGGCCGTC AGAAAGTGAT TGATTATGTG GTAGAGAAAT ATGGCAAAAA ACAAGTAGCG
CAGATTGTAA CCTATGGTAC AATGGCAGCG AAGATGAGTA TTAAGGATGT GGCGCGTGTA
CTGGATCTTC CGTTACAGGA ATCAAATGCG CTGGCCAAAC TTGTACCCGA CAAACCAGGC
ATTGAATTGA ACTGGGTAAT GAAAGGCCCG ATGAAGGCGT CGGATAAAAA GAACGAAAAA
GACAAAACGC TTACAGAAGA ACTAACGCCG GAAGATATAG AGAATGTAAA GAAGCTTCGT
GAAATGCTGG ATGACGAAGG CACACTTGCT TCTGACGTAT TGAAGGAGGC ATTGATATTG
GAAGGCTCTG TACGCGGCAC GGGTATTCAC GCGGCAGGTA TCATCATTGC GCCAAAAGAC
CTGTATGATA TTATCCCCGT ATTCACCGCA AAGGATTCGG AGTTGTTGGT TACACAGTTT
GACGGCAAAG TAATTGAAGA TGCAGGTGTA ATCAAGATGG ACTTTTTGGG TTTGAAAACC
CTTACCATCA TTCGTGATGC GTTAAAAATG ATTGAAGAAA ACCACGGTAT AAAAATCGAT
ATCGATTATA TTCCGCTGGA TGATGCGAAG ACATTTGAAT TGTACCAGAA AGGTGAAACA
AACGCGACGT TCCAGTTTGA ATCGGCGGGG ATGCAAAAAC ACCTCATCAA TTTAAAACCG
GATAAGTTTG AGGATTTGAT TGCGATGAAC GCCCTATACA GACCGGGCCC GATCGAATAC
ATTCCTAAAT TCATTCAGCG TAAACTGGGC AAAGAAGAGA TTGTGTACGA CTTGCCGGAA
ATGGAAGAAT ACCTTGGTGA TACGTATGGC ATTACCGTTT ACCAGGAACA GGTAATGCTT
TTGTCTCAGA AGCTGGCTGG CTTTACAAAA GGGGATGCCG ATGTACTGCG TAAGGCAATG
GGTAAAAAAG ACCGTGCCAC GCTGGATAAA ATGAAAGGCA AATTTATTGA AGGTGCGGTA
GCAAAAGGAC TTGATCCGAA AGTATGTGAA AAAGTATGGA CCGACTGGGA AGCCTTTGCT
CAATACGCGT TTAACAAATC GCACTCTACC TGTTATGCGT TTGTAGCGTA TCAGACGGGT
TATTTAAAAG CAAATTATCC TTCTGAATAT ATGGCGTCTG TGTTGACGCA TAACTTAAGC
AACTTTGATA AGATCTCTTT CTTTATGGAA GAGTGCCAGC GTATGGGCAT GGCGGTTCTT
GGGCCGGATG TAAATGAAAG TAGTTACCAG TTTTCTGTTA ACAGCAACGG GCAGATCCGT
TTCGGGATGG GCGCCATTAA AGGTGTGGGA GAAGGCCCGG TGCAGGCGAT TGTTGATGAA
CGCAAGGCAA ACGGACCATT CAAGGATTTC TTTGATTTTG TTTCCAGAGT TAATCTCCGT
GCGGTAAGTA AAAAAACATT TGAATCGCTT GCCCTTGCCG GCGCACTGGA TTATTTCACC
GAACTGCACC GTGCACAGTA TTTCAATGTA GCGGAACGTG AAACCATCAC ATTCCTTGAA
AAAGCGATCC GTTACGGAAA TGCTTTTCAG ACGGAAGATG ACAGCAATCA ATCGTCGCTG
TTTGGCGATA GTTCAAGTGC GAAACCTGCG CCGCCTAAAA TCACGCCTTG CGAGGAATGG
GGAAATATTG AAAAACTGAA AAAAGAAAAA GAGATTGTTG GTTTCTATAT TTCCGGTCAT
CCGCTGGATC AGTTCAAACT GGAGATCGAC AATTTCTGTA ATTGTCCGTT GGAGAATGTC
ATGAGCAGTC CGCAGGGTAA AGACCTTACT GTAGCGGGTA TTGTTACGAA AGTAAATGTA
CGCCAGAGCA AAAACGGAAA ACCATTTGTA CTCTTTACAA TTGAAGATTA CAGCGGCTCG
CTTGATCTGG CTTTATTTGG CGAAGATTAT CTGAAACACG CGCATTTTAT CAATATTGGC
GAATTCCTGT TTATGAAAGG CAGTTTGAAG CCTAAATGGG GCCGTGAAGG GGAATTAGAC
TTTAAAATCA CCACTACGCA GCTATTGGCA GATGTACGTG CTAAATTATG TAAAAGCGTT
AATATAAGTG TTAATCTGGA CCAGATCAAT GCTATTACCG TTGTTGAAAT TGACAGGATC
GTTTCGGAGC ATAAAGGCAG CTGTTTGCTC TATTTAACAC TGACTAAAAA TACAAACGAG
CATACAGTAA AAACATTCTC ACGTAGTTAC AGAGTTGACC CGAATAACGT ATTTCTTAGC
GAGTTGAACA AACTGGAAGG CATCTCGTAC AAAATAGGTG CCTAA
 
Protein sequence
MPDFAHLHVH SQFSLLDGAA SIKGLVGKAV KNEMKALALT DHGNMHGIFQ FVAEAVKNNI 
KPIVGCEFYL VEDRFKKNFT KDNKDVRYHQ LLLAKNPEGY KNLIKLCSLG YIEGQYGKYP
RIDKELILQY HKGLIATTCC LGAEVPRTIL AKGEEAGEKA FKWWLDLFGE DYYVELQRHD
IKEQNIVNEV LIKLARKYQV PIIASNDSHY VDQKDSNAHD ILLCINTGEK QSTPTMKDFS
DDESMMKGRR FAFANDQFYF KTKEEMSTLF SDIPEAIDNT MQIVDKVEIL KLKQDILLPN
YEIPSTFLDQ DNYLQHLTYE GARNRYVDVT PEIKERLDFE LHTIRTMGFA GYFLIVQDFI
NKGREIGVLI GPGRGSAAGS AVAYCIGITN IDPIKYNLLF ERFLNPDRKS MPDIDTDFDD
EGRQKVIDYV VEKYGKKQVA QIVTYGTMAA KMSIKDVARV LDLPLQESNA LAKLVPDKPG
IELNWVMKGP MKASDKKNEK DKTLTEELTP EDIENVKKLR EMLDDEGTLA SDVLKEALIL
EGSVRGTGIH AAGIIIAPKD LYDIIPVFTA KDSELLVTQF DGKVIEDAGV IKMDFLGLKT
LTIIRDALKM IEENHGIKID IDYIPLDDAK TFELYQKGET NATFQFESAG MQKHLINLKP
DKFEDLIAMN ALYRPGPIEY IPKFIQRKLG KEEIVYDLPE MEEYLGDTYG ITVYQEQVML
LSQKLAGFTK GDADVLRKAM GKKDRATLDK MKGKFIEGAV AKGLDPKVCE KVWTDWEAFA
QYAFNKSHST CYAFVAYQTG YLKANYPSEY MASVLTHNLS NFDKISFFME ECQRMGMAVL
GPDVNESSYQ FSVNSNGQIR FGMGAIKGVG EGPVQAIVDE RKANGPFKDF FDFVSRVNLR
AVSKKTFESL ALAGALDYFT ELHRAQYFNV AERETITFLE KAIRYGNAFQ TEDDSNQSSL
FGDSSSAKPA PPKITPCEEW GNIEKLKKEK EIVGFYISGH PLDQFKLEID NFCNCPLENV
MSSPQGKDLT VAGIVTKVNV RQSKNGKPFV LFTIEDYSGS LDLALFGEDY LKHAHFINIG
EFLFMKGSLK PKWGREGELD FKITTTQLLA DVRAKLCKSV NISVNLDQIN AITVVEIDRI
VSEHKGSCLL YLTLTKNTNE HTVKTFSRSY RVDPNNVFLS ELNKLEGISY KIGA