Gene CHU_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0088 
Symbol 
ID4185997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp103379 
End bp103951 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content36% 
IMG OID638070088 
Producttransmembrane protein 
Protein accessionYP_676722 
Protein GI110636515 
COG category[S] Function unknown 
COG ID[COG2928] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0516361 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAC TTATACGCTA TTTTATTCAG GGTTTATTAT TCTGGACACC GATCTTTATC 
ACGGTGTACA TTATTTTTTT TATTTTTAGT GTGTTTGACC GGATCATACC AGCCTTATTC
AATGTAGAAC TGACACCAGG GTTGGGCATT TTAATTGTTG TAGTGTTCTT AACAACTACG
GGATCCATCA CATCTATGCT GCTAGTAAAG CCTGCATTTA GTTTTTTAGA AAACTATGTC
TATAAAATTC CATTCATAAA TATTATTTAT TCTTCTTCCA AAGATGTTGT AAGCGCTATT
GTTGGAGAGA AGAAACGGTT TGATCATCCG GTAATGGTAA AAACAGGTGG TGGAGAGACA
GGTACATTCA GAATTGGTTT TGTTACCCGA GATGAATTTA ATGTTAAGCA ACTGGAAACA
TTAGTGGCAG TATATTTTCC GCACTCATAT AATATATCCG GCAACATACT TTTTGTGCCC
AAAGACAAGG TACTTCCTTT AAATATCACG GGTGCAGAAG CAATGAAATT TATTGTGTCT
GCAGGTATGA CCGGAAACCT GGACGAAAAA TAA
 
Protein sequence
MKTLIRYFIQ GLLFWTPIFI TVYIIFFIFS VFDRIIPALF NVELTPGLGI LIVVVFLTTT 
GSITSMLLVK PAFSFLENYV YKIPFINIIY SSSKDVVSAI VGEKKRFDHP VMVKTGGGET
GTFRIGFVTR DEFNVKQLET LVAVYFPHSY NISGNILFVP KDKVLPLNIT GAEAMKFIVS
AGMTGNLDEK