Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0088 |
Symbol | |
ID | 4185997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 103379 |
End bp | 103951 |
Gene Length | 573 bp |
Protein Length | 190 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 638070088 |
Product | transmembrane protein |
Protein accession | YP_676722 |
Protein GI | 110636515 |
COG category | [S] Function unknown |
COG ID | [COG2928] Uncharacterized conserved protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0516361 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAACAC TTATACGCTA TTTTATTCAG GGTTTATTAT TCTGGACACC GATCTTTATC ACGGTGTACA TTATTTTTTT TATTTTTAGT GTGTTTGACC GGATCATACC AGCCTTATTC AATGTAGAAC TGACACCAGG GTTGGGCATT TTAATTGTTG TAGTGTTCTT AACAACTACG GGATCCATCA CATCTATGCT GCTAGTAAAG CCTGCATTTA GTTTTTTAGA AAACTATGTC TATAAAATTC CATTCATAAA TATTATTTAT TCTTCTTCCA AAGATGTTGT AAGCGCTATT GTTGGAGAGA AGAAACGGTT TGATCATCCG GTAATGGTAA AAACAGGTGG TGGAGAGACA GGTACATTCA GAATTGGTTT TGTTACCCGA GATGAATTTA ATGTTAAGCA ACTGGAAACA TTAGTGGCAG TATATTTTCC GCACTCATAT AATATATCCG GCAACATACT TTTTGTGCCC AAAGACAAGG TACTTCCTTT AAATATCACG GGTGCAGAAG CAATGAAATT TATTGTGTCT GCAGGTATGA CCGGAAACCT GGACGAAAAA TAA
|
Protein sequence | MKTLIRYFIQ GLLFWTPIFI TVYIIFFIFS VFDRIIPALF NVELTPGLGI LIVVVFLTTT GSITSMLLVK PAFSFLENYV YKIPFINIIY SSSKDVVSAI VGEKKRFDHP VMVKTGGGET GTFRIGFVTR DEFNVKQLET LVAVYFPHSY NISGNILFVP KDKVLPLNIT GAEAMKFIVS AGMTGNLDEK
|
| |