| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0087 |
|---|
| Symbol | ispH |
|---|
| ID | 4185996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 102449 |
|---|
| End bp | 103330 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638070087 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_676721 |
|---|
| Protein GI | 110636514 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0564408 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTAA TTATAGATAA AAATTCAGGC TACTGTTTCG GCGTTGAGTT TGCTATTCAG
ATGGCGGAAG ATGAAATGGC TACAGGCGAG CCGTTGTTTT GTCTTGGCGA CATCGTTCAT
AATAGCATGG AGGTAGAGCG GTTAGCTAAA AAAGGATTGA AAATTATAGA TCGGGAAGAA
TTAAAAAAAC TTTCAGATTG TAAAGTTTTA ATCCGTGCAC ACGGAGAGCC GCCGGAAACC
TACCAGCTTG CATTAGAAAA TAATATTGAA CTGGTAGATG CATCTTGTCC GGTTGTATTA
AAACTGCAGA ACAGAGTTAA AGCATCGTTT GACGCTATTG ATTCAAAAGA CGGGCAGATT
GTCATATACG GACAGGAAGG TCACGCTGAA GTGATTGGTA TTGCAGGCCA GACAGGAGAT
AAAGCAATTG TTATTACAAC GGAAAAAGAT CTGGATAAGA TTGATTTTGA AAAGCCTGTA
ACCTTGTATT CTCAAACAAC AAAAAGTACA CAGGGTTTTT ATAAAATGAA AGACCTGATT
GAAGCACGTG TTGCAGAAGC AGGAAAAAAC GTTGACGAAA ACTTTGAATA CAATGACAGT
ATTTGCAGAC AGGTATCAAA CAGAGAGCCT CAGTTGAGAA AATTCTCAAA GGAATTTGAT
GTTGTTATTT TTGTGAGCGG CAAAAAAAGC TCAAACGGCA AAGCATTATA CGGCGTTTGT
AAACAGGAAA ACGAACGGAG TTATTTTGTA GAAAATGAAA CAGAAATAGA ACCTTCCTGG
ATAAGAGCTA CAGACAATGT AGGCATCTGC GGTGCAACGT CTACCCCTAT GTGGCTGATG
GAAAAAGTGC AGAACTATAT ACAGGCACAC TCCTGGAATT AA
|
|---|
| Protein sequence | MDVIIDKNSG YCFGVEFAIQ MAEDEMATGE PLFCLGDIVH NSMEVERLAK KGLKIIDREE
LKKLSDCKVL IRAHGEPPET YQLALENNIE LVDASCPVVL KLQNRVKASF DAIDSKDGQI
VIYGQEGHAE VIGIAGQTGD KAIVITTEKD LDKIDFEKPV TLYSQTTKST QGFYKMKDLI
EARVAEAGKN VDENFEYNDS ICRQVSNREP QLRKFSKEFD VVIFVSGKKS SNGKALYGVC
KQENERSYFV ENETEIEPSW IRATDNVGIC GATSTPMWLM EKVQNYIQAH SWN
|
|---|
| |