Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0080 |
Symbol | rfaQ |
ID | 4185989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 95542 |
End bp | 96516 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638070080 |
Product | glycosyl transferase family protein |
Protein accession | YP_676714 |
Protein GI | 110636507 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.49427 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.135541 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTT TAATCCTTCG TTTTTCTTCC ATTGGCGATA TCGTTTTAAC AACGCCGGTT ATCCGGTGCC TGAAAAAACA AATCCCTAAT GCTGAAATAC ACTTTGCAAC AAAAGCTTCT TTTAAAAGTA TTTTAGAAAA CAATCCGTAC ATAGACAAGC TGCACCTGCT TGAATCTTCC ACTGCTTCCT TTATAAAGCA GCTGAAAGCC GAACGGTTTG ATGTTGTGAT TGATTTGCAT AGCAACATCC GCACAAAACG CATTAAGTGG GCGCTTAAGG CTAAAAGTTT CACGTTCGAT AAATTAAATA TCCGTAAGTG GTTTTATGTG AATTGGAAAT GGAAAACCAT GCCTGCAATT CATATTGTGG ATCGGTATTT AGATACTGTC AAACACCTGG GTGTAAAAAA TGACAATGAA GGCCTGGATT ACTTTATACC GGAAAAAGAT ATTATTTCCA GAGACAGTCT TCCGCAGAAA TATGCTGCCG GGTATGTTGC TATCGCTATT GGTGCTCAGC ATGCTACCAA GCGGCTGCCG GAAGCAAAAC TGATTGAACT TATCGGCAAG ATATCCCACC CTATTATTTT ACTTGGCGGA AAAGATGATA CTGCTACAGC CGCGCGGCTT GTTGCGTATT TCCCGGACAC AAAAAATATT CTGAATGCCT GCGGCACATA TAATTTAAAC CAATCAGCTT CAATTGTACA TCAGTGCATG TATCTATACA CACATGATAC CGGCTTAATG CACATCGGTG CAGCACTTCA AAAAAGAATT ATTTCTATTT GGGGCAACAC AACGCCTGAG TTAGGCATGT ATGCTTATAA AACCGAACAT GTTAACTGGC AAAAAGAGGA CCTCTATTGC AGGCCTTGTT CGAAAATCGG TTATAACAGC TGCCCTAAAA AACATTTCAG ATGTATGAAT GAACAGGTTC TTCCTGTTCA TGAAATAGAA TCCAGATGGA ATTAA
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Protein sequence | MKILILRFSS IGDIVLTTPV IRCLKKQIPN AEIHFATKAS FKSILENNPY IDKLHLLESS TASFIKQLKA ERFDVVIDLH SNIRTKRIKW ALKAKSFTFD KLNIRKWFYV NWKWKTMPAI HIVDRYLDTV KHLGVKNDNE GLDYFIPEKD IISRDSLPQK YAAGYVAIAI GAQHATKRLP EAKLIELIGK ISHPIILLGG KDDTATAARL VAYFPDTKNI LNACGTYNLN QSASIVHQCM YLYTHDTGLM HIGAALQKRI ISIWGNTTPE LGMYAYKTEH VNWQKEDLYC RPCSKIGYNS CPKKHFRCMN EQVLPVHEIE SRWN
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