| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0051 |
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| Symbol | tnpX |
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| ID | 4186972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 61855 |
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| End bp | 63396 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 638070049 |
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| Product | site-specific recombinase |
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| Protein accession | YP_676685 |
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| Protein GI | 110636478 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.169299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000782563 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAG CGGTAATTTA TTCTCGGGTA TCAACTGATG AGCAGGCACA ATTAGGTTAC
AGTCTAAGGG ATCAGGAACG ATGTTTAAGA TTATTTTGTG AGAAAAATGA CTTAGAAGTT
GTGCATCATT ATCAAGACGA TCATAGTGCA AAGGATTTTA ATAGACCACA GTTTCAGCAA
TTCTTAAGAG ATGTAAAAAG TAAAAGAATC AAGGTTGACT ATTTTGTTTG CCTGAAACAG
GATCGGTTTT CAAGAGATAC AAGATTAGCA TTGAATTCAG TTCATGATCT AGAGAAACTT
GGTGTGACAG TTAAATATGT AGAAAATAAT TTAGACCTTT CAATTGCAGA AAACATTATA
CCTTACTTGC TAAATTTTGG AATAGCTGAA TTGGAGAATA AAAGGTTAAG CGAAAGAACA
AAGAAGGGTA TGCGCCAAGC TAAACGTGAA GGGCGTTGGG TTGGTACACC CCCAAGAGGT
TACAAATCTA TACCCGATTC TACAGGAAAA AAAATATTGA CACCGAATCA ATATTCAACG
TTAATTATAG AAGCATTTAC AGAGTTTGCT CAAGGGAATC ATTCTACAGA ATCATTAAGG
AAGGTCTTAT ATGCACGTGG TCTAAAAGTA TCAGAGAATC AATTTCCAAA TATCCTTAAA
AATCCTATTT ATTGTGGGAA GATAAGAATC GATGAGTGGA AAGAAGAGAA AGAAGAAATT
GTCATCGGAA TTCATGAGCC TTTGATAAGT GTGGAGCTAT TCGAAAAAGT ACAGCGTATA
TTAAACGGAA CTTCTACACC TAACAAACCT CATAAAAAAC TTGATCCTGA ACTTCCATTG
CGGCCCTTTT TAAAATGCAG TTGTGGCAGT AATTTGACAG GGAGTAGGTC AAGGAGTAGA
AATGGCAATT ATCATTATTA CTACCACTGC CAAAATGGTT GTTCTGTAAG ATTTCCTGCT
AAGGTTGCAA ATAAAAAATT CGAAACGTTT CTTTCAATGT TTTCTTTTTC TGAAGATGTT
ATTCTTTTGT ATAAAGAAGT ATTAAAAGAC GAATTCTCAA AACAAGTAAA AGAAAGGTTG
GAATTGAGTG CAGCTGATGC GGCACTCAAA TTAAAAACCC AAAATCTTCT TGATAATGCA
GATGAAAAAT ATATCGCGAA TGAGCTTGAT AATACCACTT ATCAAAGAGT AAAAGAAAAG
TATCAGAAAA TACTGGATAC AATTACAAAT AAAGAGCTCG ATTCTAAAGT TGTTAAGTCT
GAATTTGAAA AATATTTAAA AGGAGTAACC CTCTTGGATT CATTAGATGT TAAGTATAAA
GAAGGAACGA TAGAGTTTAA AAACGCTCTT CTTGGTTCGA TATTCATGGG CAAATTAGAA
TTTTCCGAAA ACGAGTATCG AACCACTCAA ATTAATAGTG TTGTCGAAAA TTTGCTTTTG
AATTTCAATG AATTAGCAAG CTATAAAAAA GAAAAAGCCA CTACGAATAG TGGCTTTTTA
CAGCAGGCTC CCCCTCTTGG GCTCGAACCA AGGACCCCAT GA
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| Protein sequence | MKKAVIYSRV STDEQAQLGY SLRDQERCLR LFCEKNDLEV VHHYQDDHSA KDFNRPQFQQ
FLRDVKSKRI KVDYFVCLKQ DRFSRDTRLA LNSVHDLEKL GVTVKYVENN LDLSIAENII
PYLLNFGIAE LENKRLSERT KKGMRQAKRE GRWVGTPPRG YKSIPDSTGK KILTPNQYST
LIIEAFTEFA QGNHSTESLR KVLYARGLKV SENQFPNILK NPIYCGKIRI DEWKEEKEEI
VIGIHEPLIS VELFEKVQRI LNGTSTPNKP HKKLDPELPL RPFLKCSCGS NLTGSRSRSR
NGNYHYYYHC QNGCSVRFPA KVANKKFETF LSMFSFSEDV ILLYKEVLKD EFSKQVKERL
ELSAADAALK LKTQNLLDNA DEKYIANELD NTTYQRVKEK YQKILDTITN KELDSKVVKS
EFEKYLKGVT LLDSLDVKYK EGTIEFKNAL LGSIFMGKLE FSENEYRTTQ INSVVENLLL
NFNELASYKK EKATTNSGFL QQAPPLGLEP RTP
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