Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0026 |
Symbol | mltD |
ID | 4183675 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 28037 |
End bp | 29524 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638070024 |
Product | peptidoglycan-binding lytic transglycosylase |
Protein accession | YP_676660 |
Protein GI | 110636453 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.250795 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.876942 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTA GAATCACTTC AGCATATACA GGTTTAGCAG TATTATTCTC CATTCTTTTC ATGGGAGCCA GTCCTGTGTG TGCTCAAACA GATTCTATAA ATAATAAAGT GTTTGCAGAC ACTACTTCAA TTGTTACATC AGGCGATTCT ACCATTATTG AAGCAGAGAT TATAGATGAA ACAGTCCCTA AACAGGCTGC ACAATCTTCT GTTGACCAGG TGATCGAGCA ACGTTTAAAA GTGCTGCAAA ACAAAGTTCC TCTTGTTTAC AATGCAAAAA TAAAAGGGTT CATCGATTAT TTTTCTGTTC GTAATGCACG TTACGCTATG ATCATGGAGC GCAGAAAACG CATCTATTTC CCTATGTTTG AAGAGATCTT AAAATCTCAG GGTGTGCCGG AAGAAATAAA GTATCTGGCA ATTGTTGAAT CCGGATTGAA TGCGAAAGCG GTTTCACCTG CGGGTGCAGC TGGCCTTTGG CAATTCATGA CCTTTACAGG AAAAGAATTT GGACTGAAAC AGGATGACTT GCTGGACGAA CGTCTTGATC CGGAAAAAGC TACTGTAGCT GCATGCCGTT ATCTGACAGT TCTGTATAAT ACATTTAAAG ATTGGGAACT TGCGCTGGCG TCTTACAATT GCGGACCGGG TAATGTGCGA CGTGCCATTC GTAAATCCGG TTATAAGGAA ACCTTCTGGC AGATCTATGA TTACCTGCCT AAAGAAACCA GAAGTTATGT GCCGCAGTTT GTTGCGTTAA CATACATTAT GAATCACATG GGAGACCACG GCATTGTTGC TGATTCAATT GAATACCCGA TTGCTTTTGA TACCATATTT GTGAATCAAT ATTTTGATAT GTTCACGTTT AGTGATGTAT TGAATATTTG TACAGACGAT ATGCGTAAAC TGAATCCTGC ACTTAAAAAA GGCGTTTTGT CAGGCGCATA TCCATATAAG ATCCGTGTGC CGGTAGATAA AATGGCTCAG TTTTATTTAA ACAGAATTGA TATTCTGGAT GCGTGCAGCA AGGAAGTACC ACGTGAAAAT GTAAGCAGCT CTCCTGTACG TGCCGTCACT AGCAGCAGCT CATCTTCGTC CGGCGCGCCG GCTTCTACAC AAAAGGTTTA TTATACCGTT AAGAATGGAG ATGCATTAGG TACGATTGCC AGTAAATATC ATGTTACGGT AACCGATATA AAACGCTGGA ATAAATTATC ATCAAGCACC ATTCGCGTGG GGCAGCGATT GATTATCTAT AAAAAAGTTT CGGCAACAGC GTCCAGAATA TCAACTTCAG ATACGGTAAA ATCACCGGCT GCATCAACGG TACCCAAGTC TGCGCCAAGT GTATATTATG TAAAGAATGG AGATTCGCTT TGGACCATCT CTCAAAAATT CCCGGGACTC ACCGTTGAGA AAATTAAAAA GCTGAATGGA TTGACGTCCA ATAGTATTAA AGTTGGGCAG AAACTAATTT TAAATTAA
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Protein sequence | MKIRITSAYT GLAVLFSILF MGASPVCAQT DSINNKVFAD TTSIVTSGDS TIIEAEIIDE TVPKQAAQSS VDQVIEQRLK VLQNKVPLVY NAKIKGFIDY FSVRNARYAM IMERRKRIYF PMFEEILKSQ GVPEEIKYLA IVESGLNAKA VSPAGAAGLW QFMTFTGKEF GLKQDDLLDE RLDPEKATVA ACRYLTVLYN TFKDWELALA SYNCGPGNVR RAIRKSGYKE TFWQIYDYLP KETRSYVPQF VALTYIMNHM GDHGIVADSI EYPIAFDTIF VNQYFDMFTF SDVLNICTDD MRKLNPALKK GVLSGAYPYK IRVPVDKMAQ FYLNRIDILD ACSKEVPREN VSSSPVRAVT SSSSSSSGAP ASTQKVYYTV KNGDALGTIA SKYHVTVTDI KRWNKLSSST IRVGQRLIIY KKVSATASRI STSDTVKSPA ASTVPKSAPS VYYVKNGDSL WTISQKFPGL TVEKIKKLNG LTSNSIKVGQ KLILN
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