| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0013 |
|---|
| Symbol | nagA |
|---|
| ID | 4186894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 11919 |
|---|
| End bp | 14891 |
|---|
| Gene Length | 2973 bp |
|---|
| Protein Length | 990 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638070011 |
|---|
| Product | b-glucosidase |
|---|
| Protein accession | YP_676647 |
|---|
| Protein GI | 110636440 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[V] Defense mechanisms |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases
[COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAA AGATTTTATT ACAAGCAGGT ATACTGCTTT CACTTATATT GTTTTTTGTT
GCTGGCGCGG CTACCTGGGA AAAGCCCGAA CCGTTCAAAG ATACCCTTGC AGAAGCATGG
GCAGACAGCG TTATGTCTAC ACTCACTGAT GAACAGGCAC TGGGGCAACT GTTTATGGTT
GCTGCGTATT CAAATAAACC TGAAGCCCAT GCACTGGAAA TTGAACAACT TATAAAAAAT
AATGGTATTG GCGGTGTGAT TTTTTTTCAG GGCGGTCCGG TAAGGCAGGC CCAGTTAACC
AACAGATATC AATCGGTAAG TAACGTGCCG CTGTTTGTTG CCATGGATGC GGAATGGGGG
TTGGGCATGC GGCTGGACAG CACCATGAAT TTTCCCAAAC AAATGACGCT GGGTGCTATT
CAGGATAATG CAGCTATTTT TAACATGGGC GTTGAAATCG GCAAACAATG TAAACGGCTT
GGCGTACATA TAAATTTTGC ACCTGTTGTT GATGTTAACA GCAATGCAAA CAATCCGGTA
ATTGGCGTGC GCTCGTTTGG TGAAGATAAA ATCAATGTAA GCCAGAAAGC AATCGCCTAT
ATGAAAGGAA TGCAGTCTGT GCATGTGATG GCAAATGCAA AACATTTTCC GGGCCACGGA
AATACAGATA CCGATTCACA TTTCTCTTTA CCGGTTGTTA ATAAAAATGT TCAGGAATTG
AATGACACAG AGCTGTATCC TTTCAGACAG CTGATCGATT CAGGTGTTGG AAGCATTATT
GTTGCTCACA TGAATGTACC TTCTTTAGAC AATACAAACA AACCGGCAAC GTTGTCCAAA
CCAATTGTTA CGGATCTGTT ACGGAATGAT ATGGGCTTCA GGGGGCTCAT CTTTACAGAT
GCGCTTAATA TGAAAGGAGT CAGCAATCTG TATAAACCGG GAGAAGTTGA TGTAAAGGCC
CTGCTTGCGG GAAATGATAT CCTGTTATAT GCTGAAAATG TTCCCTTAGC CATAAAGAAA
ATAGTAAAAG CAATTAATGA TAAGGATATA ACAAAAGAAG AAATTCATGC ACGCGTAAAA
AAAATATTGT TGGCTAAATA TTGGGCCGGA CTAAATCATT TCAAAAAAAT AGAAACAGAA
AATCTATATC AGGATCTGAA CAACGCCTCT GCAAAGGCTC TTTTAAATAA CTTATATAAA
CAGTCACTTA CTGTTGCCCG GAATAAAAAC AACATTCTTC CATTTGTACT GGCAGATACA
ACTTCTTTTG CGTCTGTAAG TATTTCATTT CATGGTTCTG AAAATATTTT TCAGCAAACC
CTTAGTAACT ATGCTGCTTT TGATCACTAC TCCATAGAAA AATCGGGCAG CGACACGGCT
CTGGTTTCTT TGGTAACTAA ACTGAAAAAA TATGAAGCGG TTATTGTTGG TGTACATCAG
GTAAATTCTT ATAACTCTAA AAACTATGGA ATAAGTACTG CTACCAAAAC ATTTATACAG
CAATTACAGG CCGCACATCC CAATGTTACG GTTGTGGTGT TTGGTATTCC GTATGCGTTA
AAATATTTTT CAGATTCGAA AGTGCTGGTT TGTGCCAACG AAGACAATGC GTACACACAG
CGCCTGGTGC CGCAATTGTT ATTCGGTGCG ATTCAGGTAA ACGGACGGTT GCCGGTAACC
GCCGGTGGAA ATTTAAAATT GAATACCGGA CTTCCTGTTT CATATAATTG CATGCGTATG
CGGTATGACT TGCCGGAGAA TTTACGTATG GACAGCAAAA CACTAAGTAA AATAGATACA
ATTGTAATGC ACGCCATCAC AGAAGGCGCT ATGCCGGGCT GTCAGGTATT GGTCGCTAAA
AAAGGCGCTG TGATTTATAA TAAATCATTT GGTTATTACA CCTATGACAA AAAGAATCCG
GTAACATCCA CTACCTTGTA TGATATTGCT TCTATAAGTA AAGTTGCAGG AACATTACAG
GCCATTATGT TCTTAGAAGA GCGCGGCCTG ATAAAATTGA ACTATAAAAT TTCTGTGTAC
CTGCCCGACC TGATCGGCAC GAATAAAGAA GACCTGATCA TTCGGGATAT TCTAACGCAC
CAGGCAGGCC TTCAGCCATT TTTGCCGCAC TGGCGAAAAA CAATGGATAG TTCAAACTTC
AGTAAAAAAT ATTACAGCAC CATTAAAAGC GACAGCTTCC CGAACATGGT TATACCGGGG
CTTTACAGCA TAGCGGGTAT TGAAGATTCC TTGTGGAAAT GGACCGTGCA GTCATCGTTA
ATGGCACATC CCAAACAAGG GAAAAAGAAA TTGCCTTATT CCTATGTGTA TAGTGATCTT
GGTTTTTATA TCATGAAGCG TTTGGCTGAA AGCCAGCTGG GACAGCCGAT GGAAGAGTTT
TTAAAACAGA ACTTCTATGA TCCGTTAGGT CTGCAGAACT TCTATTATAA TCCGCTGGAA
AATGGTGTAC CGGCTTCGCG GATCACACCA ACCGAACAGG ATAAGTATTT CAGAAAATCA
CTGGTTGTGG GTACGGTGCA TGATCCGGGT GCGGCTTTAT TAGGGGGCAT TGGCGGGCAT
GCAGGTATTT TCTGCAATGC CGAAGATCTG GCAACACTGA TGCAGATGAA TCTTCAGCTT
GGCTATTATG GCGGTTATCG CTTTTTACTG CCTGAAACGA TCGAATTATT CAGCAAAACC
CAATCAACAA AAAACAGACG TGGCTTAGGT TGGGATAAAC CCCAGGCAAG CAGCGGCGGA
CCATGTTCTT ATTTAGTTTC TGCTTCCACC TATGGCCATA CCGGATTTAC GGGTACCTGT
GCCTGGGTTG ACCCTGAACA GGAATTAGTT TATATTTTCC TTTCAAACCG GGTATACCCG
GATGCGAACA ACACTAAGCT TATAAAGGAA AGTATTCGGA CTCAAATTCA AACGGTTATC
TATAAATCCC TTCTTAATTT CAGAGAACAA TAA
|
|---|
| Protein sequence | MRKKILLQAG ILLSLILFFV AGAATWEKPE PFKDTLAEAW ADSVMSTLTD EQALGQLFMV
AAYSNKPEAH ALEIEQLIKN NGIGGVIFFQ GGPVRQAQLT NRYQSVSNVP LFVAMDAEWG
LGMRLDSTMN FPKQMTLGAI QDNAAIFNMG VEIGKQCKRL GVHINFAPVV DVNSNANNPV
IGVRSFGEDK INVSQKAIAY MKGMQSVHVM ANAKHFPGHG NTDTDSHFSL PVVNKNVQEL
NDTELYPFRQ LIDSGVGSII VAHMNVPSLD NTNKPATLSK PIVTDLLRND MGFRGLIFTD
ALNMKGVSNL YKPGEVDVKA LLAGNDILLY AENVPLAIKK IVKAINDKDI TKEEIHARVK
KILLAKYWAG LNHFKKIETE NLYQDLNNAS AKALLNNLYK QSLTVARNKN NILPFVLADT
TSFASVSISF HGSENIFQQT LSNYAAFDHY SIEKSGSDTA LVSLVTKLKK YEAVIVGVHQ
VNSYNSKNYG ISTATKTFIQ QLQAAHPNVT VVVFGIPYAL KYFSDSKVLV CANEDNAYTQ
RLVPQLLFGA IQVNGRLPVT AGGNLKLNTG LPVSYNCMRM RYDLPENLRM DSKTLSKIDT
IVMHAITEGA MPGCQVLVAK KGAVIYNKSF GYYTYDKKNP VTSTTLYDIA SISKVAGTLQ
AIMFLEERGL IKLNYKISVY LPDLIGTNKE DLIIRDILTH QAGLQPFLPH WRKTMDSSNF
SKKYYSTIKS DSFPNMVIPG LYSIAGIEDS LWKWTVQSSL MAHPKQGKKK LPYSYVYSDL
GFYIMKRLAE SQLGQPMEEF LKQNFYDPLG LQNFYYNPLE NGVPASRITP TEQDKYFRKS
LVVGTVHDPG AALLGGIGGH AGIFCNAEDL ATLMQMNLQL GYYGGYRFLL PETIELFSKT
QSTKNRRGLG WDKPQASSGG PCSYLVSAST YGHTGFTGTC AWVDPEQELV YIFLSNRVYP
DANNTKLIKE SIRTQIQTVI YKSLLNFREQ
|
|---|
| |