| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3997 |
|---|
| Symbol | |
|---|
| ID | 4180459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | + |
|---|
| Start bp | 4302852 |
|---|
| End bp | 4304402 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638069893 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_676529 |
|---|
| Protein GI | 110636321 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGGGG CAACGGGAAA ATGGCGCGGT AGGGCCCTGC TGGCGGCGGC CCTGGTGCTA
GCTTCCGCGG GGCCGGTGAT CATACCCTCC GCTGCGCGCG GTGAAGGCGT GATTGAGGTT
AGCGGAGCAG GAACCGAGCG ATTGAAGCTC GGCTTGAACA AGACGCTGGT CCTGGACCTG
CCGTCTGATG CCTACGACAT TCTGGTTGCC AATCCTGCGG TGGCAGACGC CGTGACCCGC
ACGGCCCGCC GCATCTATCT CTTCGGCAAG CAGGTGGGTG AAACCAATAT CTTTGTTTTC
GGGGCGGGCG GCGAGCAGAT CGCCAGGATC GATGTCGCAG TGGAGCGGGA TGTCGCCGGG
CTCGAGCAAT ATCTGAAGCG CTTTATTCCG AACTCCAATA TCGATGTCGA GCTGATCAAC
GACAATGTCG TCCTCACCGG CACGGTGGAA ACGCCGCTTG ACGCCTCTCG TGCTGCACAA
CTCGCCACCA TATTCGTGAC CGGTGGCGAA GCTACGACCG GGCAATATTC CCAAACAGCT
GCTGCGCCCA CTGACGGCGG CGGCGTCGCG ATCAGCAATC CTGATTCTGC ACGCCAGGTC
AGCAAGATCG TCAACATGCT TCAGATCATC GGCGAGGACC AGGTGACCCT GAAGGTGACC
GTGGCCGAGG TCAGCCGCTC CGTCATGAAG CAGCTTGGCG TCAATATGAT AGGCTCGGGA
AGCCTTGACG GGATCAGTTG GGGCGCCATC GTCGACAGTC CCTACGGTCT CGGCGCCCCG
GCCTCGGCTT CGCAGCTCGC ACTCGGGGGA TCGCTCCTTC AAGGCTATCT CAATGCCATG
GAGCAGGCGG GCGTCATGAA GACGCTCTCC GAGCCCACGC TCACGGCCAT CTCAGGCGAG
AAGGCGACAT TCAAGGTGGG CGGGGAATTC AACCTTGTCA CCGGCCAGAA AGTCGAGCAG
GGCGATGCGT CGAAGGGGCA GGCGGACCAG CTTACCTATG AGGTCGAGAA AATCGACTAC
GGGATCGGGC TGGAATTCAC GCCCACTGTG CTCTCGCCCG GACGCATCAG CCTCAAGGTG
CGAACATCGG TTTCGGAGCC GACATTCGAG GGCTCCTTTT CCCTGGGGTC GCCGTCGATC
GGGGGGCGTT TCAATAGCCC GGGCATGAAC GCGCTTTCCA TTCGCAAGCG TCTGGCCGAC
ACCACGGTGG AGCTGCCTTC AGGGGGCTCG ATGATGATTG CCGGCCTGGT GCGCGATGAT
GTACGCCAGA CGATCAACGG TCTCCCCGGC CTTTCCAAGA TTCCCATATT GGGCACTCTC
TTCCGCAGCC GCGATTTCGT ACGCAACGAA ACCGAGCTCG TGATCATCAT CACGCCCTAT
CTGGCGCGCC CGGTGGCGCG CACGGCACTT GCAAGGCCGG ACGACAATTT CAATCCGCCC
AGCGATGGCG CCGGCATATT CCTCGGCCGG GTCAACCGGA TCTATGGCGC AATGAAAACC
AACCTGCCCA AGGGCCGCTA CCACGGCGTG GTCGGCTACA TTTACAAATG A
|
|---|
| Protein sequence | MIGATGKWRG RALLAAALVL ASAGPVIIPS AARGEGVIEV SGAGTERLKL GLNKTLVLDL
PSDAYDILVA NPAVADAVTR TARRIYLFGK QVGETNIFVF GAGGEQIARI DVAVERDVAG
LEQYLKRFIP NSNIDVELIN DNVVLTGTVE TPLDASRAAQ LATIFVTGGE ATTGQYSQTA
AAPTDGGGVA ISNPDSARQV SKIVNMLQII GEDQVTLKVT VAEVSRSVMK QLGVNMIGSG
SLDGISWGAI VDSPYGLGAP ASASQLALGG SLLQGYLNAM EQAGVMKTLS EPTLTAISGE
KATFKVGGEF NLVTGQKVEQ GDASKGQADQ LTYEVEKIDY GIGLEFTPTV LSPGRISLKV
RTSVSEPTFE GSFSLGSPSI GGRFNSPGMN ALSIRKRLAD TTVELPSGGS MMIAGLVRDD
VRQTINGLPG LSKIPILGTL FRSRDFVRNE TELVIIITPY LARPVARTAL ARPDDNFNPP
SDGAGIFLGR VNRIYGAMKT NLPKGRYHGV VGYIYK
|
|---|
| |