| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3880 |
|---|
| Symbol | |
|---|
| ID | 4181668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | + |
|---|
| Start bp | 4181419 |
|---|
| End bp | 4182948 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638069772 |
|---|
| Product | thymidine phosphorylase |
|---|
| Protein accession | YP_676412 |
|---|
| Protein GI | 110636204 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0213] Thymidine phosphorylase |
|---|
| TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGC TCGTCTCTCC CGCCGGTCCC GAGCAGCCAT CTCTCCGCGT TCGACGCCTG
CTGTTGCACA CCCAGCACCA GCCGGTCGTC GTCATGCACA CGGACTGTCA CGTCTGCAGG
TCGGAAGGGT TGGCGGCACG TTCGCAGGTT CTCCTCACCA ACGGAGCCCG GCAGGTGCAT
GCGACGCTGT TTCAGGTCGA CGGCGACGCC GTGCTCAGCC ACGACGAGGT CGGTCTCTCG
GAAACGGCCT GGGACCTCCT CGGCGTCGCG GAAGGCGACG AGGTCCGGGT CAGCCACCCG
CCCGCGCTGG AATCGCTCGC AAGCGTGCGG CGCCGCATCT ATGGCCACCG CCTCGATGCC
CAGGCCCTGT CCGAGATCGT AAGGGACGTC GCCGCCGGTC GCTACACCGA CGTCCACCTG
GCCGCCTTTC TGACCGCGAG CGCGGCGCTG CCTCTCGACG AGAACGAGAC CGCCGATCTG
ACCGGCGCCA TGATCGCGGT CGGTGACAGG ATGGAATGGG ACGCTCCCAC CGTCGTCGAC
AAGCACTGTG TCGGCGGCTT GCCCGGAAAT CGCACCACGC CCATCGTCGT GGCGATCGTC
GCGGCCAATG GGCTCGTAAT GCCCAAGACC TCCTCGCGCG CCATCACCTC GCCGGCCGGC
ACCGCCGACA CGATGGAGAC GCTGGCCCCG GTCGATCTCG ATCTTGCCAC GCTGAGGCGT
GTCGTCGAGG CGGAAGGCGG ATGCATCGCC TGGGGCGGCG CCGTCCATCT GAGCCCGGCC
GACGACATCT TCGTGCGGGT CGAGCGCGAG CTCGACGTCG ACACCGAGGG TCAGCTCATC
GCCTCGGTGC TTTCCAAGAA GATCTCCGCC GGCTCCACCC ATGTCGTCAT CGACATTCCG
GTGGGTCCCA CGGCGAAGGT TCGCGGAGAA GATGCGGCAT CTCATCTCGC CTCCCGGATA
ACGGCGGTCG CGTCCCGCTT CGGCCTCGCG GCCACATGCG TGCAGACCGA TGGATCCCAG
CCGGTCGGCC GCGGCATCGG TCCCGCTCTC GAGGCGTTCG ACGTGCTTGC CGTGCTGCAA
AATGCGTCCG ACGCCCCGGA CGATCTGCGC CGGCGCGCCG CCACGTTGGC CGGCGCGGCC
CTGGAGATCG GACGCAAGGC CGGCAAGGGA GAAGGAACCG CGCTCGCGCT GGAGACGCTT
GCCGATGGTC GGGCATGGAA GAAGTTCGAG GCGATCTGCG AGGCGCAGGG CGGGCTGCGC
GCACCCCCCA GGGCGGCTCA TGTCCATCCG CTTGTCGCTC CGCGCGCCGG ACGGGTGGTT
CATATCAACA ATCGTAAGCT GTCACGCCTC GCCAAGCTCG CAGGCGCTCC GGAATCGAAG
GCGGGGGGCG TCCATATGGA CGTTCGGCTC GGCGACGAAA TCGATCGCGG GCAACCCCTG
CTCCATGTCC ATGCCGAGAC AACGGGCGAG CTTGCCTACG CGCTCGACTA TGCCGCGCGC
GCCGGGGATA TTGTCGAGAT CGAGGCTTGA
|
|---|
| Protein sequence | MTALVSPAGP EQPSLRVRRL LLHTQHQPVV VMHTDCHVCR SEGLAARSQV LLTNGARQVH
ATLFQVDGDA VLSHDEVGLS ETAWDLLGVA EGDEVRVSHP PALESLASVR RRIYGHRLDA
QALSEIVRDV AAGRYTDVHL AAFLTASAAL PLDENETADL TGAMIAVGDR MEWDAPTVVD
KHCVGGLPGN RTTPIVVAIV AANGLVMPKT SSRAITSPAG TADTMETLAP VDLDLATLRR
VVEAEGGCIA WGGAVHLSPA DDIFVRVERE LDVDTEGQLI ASVLSKKISA GSTHVVIDIP
VGPTAKVRGE DAASHLASRI TAVASRFGLA ATCVQTDGSQ PVGRGIGPAL EAFDVLAVLQ
NASDAPDDLR RRAATLAGAA LEIGRKAGKG EGTALALETL ADGRAWKKFE AICEAQGGLR
APPRAAHVHP LVAPRAGRVV HINNRKLSRL AKLAGAPESK AGGVHMDVRL GDEIDRGQPL
LHVHAETTGE LAYALDYAAR AGDIVEIEA
|
|---|
| |