| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3849 |
|---|
| Symbol | |
|---|
| ID | 4182440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | + |
|---|
| Start bp | 4150685 |
|---|
| End bp | 4152679 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638069741 |
|---|
| Product | conjugal transfer coupling protein TraG |
|---|
| Protein accession | YP_676381 |
|---|
| Protein GI | 110636173 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00986433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAGA CCAAAATCCT TTGGGGCCAG ATCATCATCG TCTCCCTGAT CGTGCTGACC
TCCGTGTGGG GCGGCACGCA ATGGGTGGCC TGGCGTCTCG GCTTCCAGCC TCAGCTCGGT
CAGCCCTGGT TCGAGCTATT CGGGTGGCCG GTCTATCTGC CGCCGTCGCT GATGTGGTGG
TGGTTTTCGT TCGAGGCTTA CGCACCGCGC ATCTTCTGGG AGGGCGGCAT CATCGCAGCC
TCCGGCGGCA TCCTGTCGAT TGCCGTCGCC ATCACCATGT CGGTGATCCG TGCCCGTGAG
GCGACCGGAC TCGACACCTA CGGCTCGGCG CGGTGGGCCG AAAAGAGGGA TATCGCGGCG
GCGGGCCTGC TCGGTCGGGA TGGTGTCGTG CTCGGAAAGT TCGAACGGGA CTATCTCAGA
CACGACGGGC CGGAGCATGT GTTGTGCTTT GCCCCGACAC GGAGCGGCAA GGGCGTTGGC
CTGGTCGTGC CGACGCTGCT CACCTGGCCA GGCAGTTGCG TCGTGCATGA CATCAAAGGC
GAAAACTGGC AGCTCACTGC CGGCTTCCGC GCACGGCACG GTCGCGCCCT CCTGTTCGAT
CCCACCAACG CCAACTCGGC CGCCTACAAT CCGCTGCTCG AAGTCAGGAA GGGGGAGTGG
GAAGTTCGGG ACGTTCAGAA CGTGGCCGAC GTGCTGGTCG ATCCGGAAGG TTCACTGGAG
AAACGGAATC ACTGGGAAAA GACCTCCCAC TCGCTGCTCG TCGGCGCGAT CCTCCACGTC
CTCTATGCCG AGGCCGACAA GACGCTCGCT GGCGTGGCCG GCTTCCTCTC CGATCCGCGC
CGGCCGATTG AGACGACTTT GAAGGCCATG ATGACCACGC CGCATCTCGG CGAAAAGGGT
CCGCACCCTG TCGTCGCGTC GGCCGCACGC GAGCTGCTGA ACAAGTCAGA CAATGAACGC
TCGGGCGTTC TGTCCACCGC CATGTCGTTC CTCGGCCTCT ATCGCGATCC CGTCGTCGCC
CACGTCACGC GCCGCTGCGA CTGGCGCATC GCCGACCTCG TCTCGGGCGA GCGCCCGGCT
AGCCTTTACC TCGTGGTGCC GCCCTCCGAC ATATCGCGGA CAAAGCCGCT CATCAGGCTG
GTGCTCAACC AGATCGGCCG CAGGCTCACC GAGGATCTGA ACGCCAAGGA TCGACGGCAT
CGAGTGCTGA TGATGCTCGA CGAGTTTCCG GCTTTGGGCC GCCTGGACTT TTTCGAGAGC
GCTTTGGCCT TTATGGCGGG CTACGGGATC AAGAGCTTCC TCATCGCTCA GAGCCTCAAC
CAGATCGAGA AGGCGTATGG GCAGAACAAT TCGATTCTCG ACAACTGCCA TGTCCGGGTG
AGCTTCGCCA CCAACGACGA GAGGACAGCC AAGCGTATCA GCGACGCTCT CGGCACCGCG
ACCGAGCTGA AGGCCATGCA GAACTATGCC GGCCACCGCC TCGCACCCTG GTTGGGACAC
TTGATGGTGT CGCGCTCGGA AACCGCGCGG CAGCTCCTCA CCCCCGGCGA GGTGATGCAG
TTGCCGCCAG ACGACGAGAT CGTGATGATT GCCGGCTCGC CGCCGATCCG GGCAACGAAG
GCACGCTATT TCGAGGACGT TCGCTTCACC GAACGCGTTC TGCAACCCCC CGATCCGACG
ACCGAGCAGC GCGTCTCGCT CGCCGATGGC TGGTCGGAGC TTGAACCTCG AAAGCCAGAC
GCGGTGCTCC TGGCCGAAGT TGATAAGGCC GAGCAGGACC GCGCCAACGC GGGTCTACGT
CGGGAGCCTG AGCTGCCGCA GCATGTCGAG ATCGTCCATG ACACCACGGA GCCGACCCCC
GAACGTGAGT TCGCCCTGGT CGAGGACAAT GCCGAGGACC GACTACGGCA GGCGCAGAAC
CAGGCGCTGC GCCGTCAGAT GCGTGGCGTC GCCCGGCAGG TATCGATGAA CCCCGATGAA
GGGATGGATT TGTGA
|
|---|
| Protein sequence | MTQTKILWGQ IIIVSLIVLT SVWGGTQWVA WRLGFQPQLG QPWFELFGWP VYLPPSLMWW
WFSFEAYAPR IFWEGGIIAA SGGILSIAVA ITMSVIRARE ATGLDTYGSA RWAEKRDIAA
AGLLGRDGVV LGKFERDYLR HDGPEHVLCF APTRSGKGVG LVVPTLLTWP GSCVVHDIKG
ENWQLTAGFR ARHGRALLFD PTNANSAAYN PLLEVRKGEW EVRDVQNVAD VLVDPEGSLE
KRNHWEKTSH SLLVGAILHV LYAEADKTLA GVAGFLSDPR RPIETTLKAM MTTPHLGEKG
PHPVVASAAR ELLNKSDNER SGVLSTAMSF LGLYRDPVVA HVTRRCDWRI ADLVSGERPA
SLYLVVPPSD ISRTKPLIRL VLNQIGRRLT EDLNAKDRRH RVLMMLDEFP ALGRLDFFES
ALAFMAGYGI KSFLIAQSLN QIEKAYGQNN SILDNCHVRV SFATNDERTA KRISDALGTA
TELKAMQNYA GHRLAPWLGH LMVSRSETAR QLLTPGEVMQ LPPDDEIVMI AGSPPIRATK
ARYFEDVRFT ERVLQPPDPT TEQRVSLADG WSELEPRKPD AVLLAEVDKA EQDRANAGLR
REPELPQHVE IVHDTTEPTP EREFALVEDN AEDRLRQAQN QALRRQMRGV ARQVSMNPDE
GMDL
|
|---|
| |