Gene Meso_3667 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMeso_3667 
Symbol 
ID4181008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChelativorans sp. BNC1 
KingdomBacteria 
Replicon accessionNC_008254 
Strand
Start bp3956497 
End bp3957978 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content62% 
IMG OID638069560 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_676200 
Protein GI110635992 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCTTT CAACCGGCAT ACAGTTGCGG CAGTCCCAAT CGCTGGTCAT GACGCCCCAG 
CTGCTGCAGT CTATCCGGCT GCTGCAGCTG ACACATATCG AGTTGGAGCT GTTCATATCC
GAGGAGATCG AGCGCAATCC GCTCCTCGAT CTTGTCGATG CGAGCGAGGA GGTGCCCGCA
AGCGTCCTTG AGGAGAGATT TGCCTCGCCG GACAGCGCCG CGGATATTGC CGAGCGGCTG
GACACCTCGC CCGAAGATCT GTTTCCAGAT GACCCGGACG TGCGGGACAC AATAGGGCCG
GATCTCATGG CCCAGTGGCG CTCCGCCGCC GGAAATGGGC TCGTCGCGAC GGGCGAGGAT
TGGAATCTGG AGGAGACGAC GGCCGCGCCG GCTACCTTGC GCGACCATGT TCGCGAGCAG
ATCGTTCTCG CCTTTCCCGA TCCGGTCTTG AAGCTGATCG CCGAGGAGCT GCTGGATGGA
CTGGACGATG CCGGCTATTT CACGGGCGAC CTGAACGAGA TCGCCGAACG CTTGGCTGCC
GAGACGGTGC TGGTGGAGCG GGTGCTTTCG ATCTGCCAGA CCTTTGATCC CCCCGGCCTG
TTCGCCCGCA CGCTTGCCGA ATGCCTTGCG CTGCAATTGA AGGCGCGGGA TCGTCTGGAT
CCTGCCATGC AGGCGATGCT TTCGCGTCTT GATCTGCTTT CAAGGCGCGA TTTTGCTTCT
TTGAAGAAAG TCTGCGGCGT GGACGAGGAG GACCTCGTGG AGATGCTGGC GGAAATCCGC
TCGCTCGATC CCAAGCCCGG CACGGCCTTC TCGTCGGCAC CCGCCGAACC TGTCCTGCCG
GATGTGATCG TGCGGCCCTC CGCCGGGGGA GCATGGGCGA TCGAGCTCAA TCCGGAAGTG
CTGCCACGCG TGCTCGTTAA CGAGACATAT TTCACGGCCG TTTCCACGCG GGCCGGCAAA
GAGGAGAAAG CCTTTCTTTC CGAGTGCCTT CAAAGTGCCA ACTGGCTGAC TCGCAGCCTG
GAGCAGCGGG CAAGGACCAT CCTGAAAGTT GCCTCCGAGA TCGTGCGCCA GCAGGATGCG
TTTTTCGTGA ATGGCGTTCG GCACCTGCGT CCGCTGACGC TGAAAATGGT GGCTGATGCG
ATCGAAATGC ACGAATCGAC CATCAGCCGC GTCGCCACCA ACAAATACAT GATGACGCCT
CGCGGTCTCT TCGAACTGCG CTACTTCTTC ACGACTGCCA TTGCCGCCGC CGACGGAGGC
GATGCGCATT CGGCGGAGGC GGTGCGTGAC CGGATCCGGC AGCTTGTGGA GGCGGAAGAC
CCCAACGAAG TGCTTTCCGA CGATACGATT GTCGAGGTTC TGCGAAAGGA CGGAATTGAT
ATCGCCCGCA GGACGATAGC AAAATACCGG GAGGCGATGA ACATCCCGTC GTCGGTTCAG
CGCAGGCGCG AGAAGAGGGT GCTCGCCCGA GCCGGCGCAT GA
 
Protein sequence
MALSTGIQLR QSQSLVMTPQ LLQSIRLLQL THIELELFIS EEIERNPLLD LVDASEEVPA 
SVLEERFASP DSAADIAERL DTSPEDLFPD DPDVRDTIGP DLMAQWRSAA GNGLVATGED
WNLEETTAAP ATLRDHVREQ IVLAFPDPVL KLIAEELLDG LDDAGYFTGD LNEIAERLAA
ETVLVERVLS ICQTFDPPGL FARTLAECLA LQLKARDRLD PAMQAMLSRL DLLSRRDFAS
LKKVCGVDEE DLVEMLAEIR SLDPKPGTAF SSAPAEPVLP DVIVRPSAGG AWAIELNPEV
LPRVLVNETY FTAVSTRAGK EEKAFLSECL QSANWLTRSL EQRARTILKV ASEIVRQQDA
FFVNGVRHLR PLTLKMVADA IEMHESTISR VATNKYMMTP RGLFELRYFF TTAIAAADGG
DAHSAEAVRD RIRQLVEAED PNEVLSDDTI VEVLRKDGID IARRTIAKYR EAMNIPSSVQ
RRREKRVLAR AGA