Gene Meso_3615 details

Gene Information

• Locus tag: Meso_3615
• ID: 4181212
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chelativorans sp. BNC1
• Kingdom: Bacteria
• Replicon accession: NC_008254
• Strand: +
• Start bp: 3900351
• End bp: 3902291
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 638069509
• Product: TRAP dicarboxylate transporter, DctM subunit
• Protein accession: YP_676149
• Protein GI: 110635941
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0581669
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCTCGC GCGAGCGCAT TCGTCCATTC CGACTACCTT TCGGCGGAGC CGCAGTCTCG 
GACGACAAAA TCATGACAAC AGCAAGCGAA GACTTCGCCC TCGGCGAGGT TAGCGAGAAT 
CTTGAGGCCC GCGCCGGGTC GGCATTTATG CGCCCGGTTG AATTCGTGGC TGCCTTGCTA 
ATGGCGGCCG TAGTTTTGCT GCTTCTAGGC GGCGTGATCT CCAGATACGT GATCGATCTT 
CCTCTCGTAT GGGTGGAGGA GGCGGCGTCC ATCTGTTTCA TCTGGCTTGC CATGTTGGGC 
TCGGCGATCG CGCTCGACCG TAACGAGCAC CTGCGGCTTA CGCTTTTTCT GCGGCTGTTG 
CCCGAGCGTC TTCAGGGGCC GGTGGAGGCC ACCGCGCTGA TGGCTGTGGC GGCGTTTCTT 
GTCGCTATGC TGCCGGTGAC ATTTGAGTAT GCCTATGAGG AGTGGTTCAT CACCTCGGCG 
GCTCTTCATA TCCCAAACAC GTTCCGCGTT GCCGGTATTC CGGTTGGCTT CACGATGATG 
CTTGGGCTGC TGCTGGTGCA TGCCTTTCGC AGTCACTCCT TGTCGGAAAT CCTCACCGGG 
GTGGTGATTG TCGTGGGCGC CGGCTTCGCG TTCTGGGCGC TTTCCGACTA CTTCATCAAT 
ATCGGAAATG TTTCGTTGGG CTTCTTCCTT GTCCTGGTTG TTGCCCTAGG ACTCGCCGCC 
GGTGTTCCGA TCGCCTTCTG CTTCGGGCTA GGAACACTCT GTTACCTGGC CTTCGCCTCC 
TATGTTCCGA TCTATGTCAT GGTCGGCCGG ATGGACGAGG GCATGTCCGG TATCATTCTC 
CTGTCGGTCC CGATTTTTGT CCTTCTGGGA TGCGTTCTCG ACACGACGGG CATGGGCAAG 
GCAATCGTCG ATTTCCTTGG TTCACTTATC GGTCATGTCA AGGCCGGTAT GTCGTACGTG 
CTGCTGAGCT CACTTTTCAT CGTTTCCGGC ATATCCGGCT CCAAGGTGTC GGACATGGCG 
ACGGTAGCCC CGGCGCTTTT CCCGGAAATG AAGCGCCGCG GCAACAATCC TCCTGAAATG 
ATCGCGCAGC TCGCAACCGG TGCCGCCATG GCCGATACCG TGCCGCCGTC GATCATACTG 
ATCGTTCTTG GGGCCGTTGC CGGAATCTCC ATTGCAGATC TGTTTGCCAG CGGCTTCGTC 
GTTGCGATGG TCCTCCTGCT GGTGCTAATG GCTCTTGCCC GCTGGCGTGC ACGCCATGAA 
TCCATGGAGG GGGTGCGCCG TGCGCCGCTG AGGATGACGA TTCAGCTTCT CGTCATCGCC 
GCACCGGCGC TTGTCTTGCC GTTCCTCATC CGCGGATCAG TTTCGAGCGG CATCGCCACT 
GCGACGGAAG TTTCCACCAT TGCCGTCGTG TACGGTCTTG CAATTGGCGC GATGCTCTAT 
GGCGGTCTCA CCCTGAAGAG CATTTACAAG ATGCTCGTCG AGACAGCCGC GATGAGCGGT 
GCGATCCTGC TGATCCTCGG GACTGCGCTT TCCATGGCGT GGGCTATCAC GCAGGCGGGC 
GTCGGCCAGA TGATCGCTGA TATCGCAGCT GGCCTGCCGG GTGGCGCCGT TTCGTTTATC 
GCCGTATCGA TCGTAACATT TCTCATCCTG GGTTGCGTGC TCGAAGGACT GCCGGCCCTC 
GTTCTCATGT CGCCGCTGAT GTTCCCGATA GCGGCCGATT TCGGGCTGCA TCCGGTCCAC 
TATGCCATGA TAGTCGTGGT CGCGATGAAT ATCGGACTGA TGGCTCCACC TATCGGCATC 
GGCTTCTACC TCGCGTGCCG GATCGGCAAT GTTGCCCCCG ACGACGCGCT TCGTGCGATC 
TGGCCCTACA TCTTAGCTTT GATCGTCGGG CTTGTGTTGA TCGCTGTCTT CCCGTGGATC 
TCGCTGGGGG TGCTGTCATG A 

 

Protein sequence

MRSRERIRPF RLPFGGAAVS DDKIMTTASE DFALGEVSEN LEARAGSAFM RPVEFVAALL 
MAAVVLLLLG GVISRYVIDL PLVWVEEAAS ICFIWLAMLG SAIALDRNEH LRLTLFLRLL 
PERLQGPVEA TALMAVAAFL VAMLPVTFEY AYEEWFITSA ALHIPNTFRV AGIPVGFTMM 
LGLLLVHAFR SHSLSEILTG VVIVVGAGFA FWALSDYFIN IGNVSLGFFL VLVVALGLAA 
GVPIAFCFGL GTLCYLAFAS YVPIYVMVGR MDEGMSGIIL LSVPIFVLLG CVLDTTGMGK 
AIVDFLGSLI GHVKAGMSYV LLSSLFIVSG ISGSKVSDMA TVAPALFPEM KRRGNNPPEM 
IAQLATGAAM ADTVPPSIIL IVLGAVAGIS IADLFASGFV VAMVLLLVLM ALARWRARHE 
SMEGVRRAPL RMTIQLLVIA APALVLPFLI RGSVSSGIAT ATEVSTIAVV YGLAIGAMLY 
GGLTLKSIYK MLVETAAMSG AILLILGTAL SMAWAITQAG VGQMIADIAA GLPGGAVSFI 
AVSIVTFLIL GCVLEGLPAL VLMSPLMFPI AADFGLHPVH YAMIVVVAMN IGLMAPPIGI 
GFYLACRIGN VAPDDALRAI WPYILALIVG LVLIAVFPWI SLGVLS