| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3546 |
|---|
| Symbol | |
|---|
| ID | 4181795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | - |
|---|
| Start bp | 3820820 |
|---|
| End bp | 3821605 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638069441 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_676082 |
|---|
| Protein GI | 110635874 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.498935 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTGCT ATCTTGCGGC CACATCCTGC TTGTCGAATG GAAGGCTCAA GATGACGATA
CGATTTGACG GGAAAACCGC GCTGATCACA GCCGCAGCTC AAGGGATCGG CCGTGCAAGC
GCGCTGGCTT TCGCGGAAGC CGGCGCAAAA GTCTATGCAA CCGACATCAA CATGGGCGCG
CTGAAGGAGA TCGAAGGCGT TTCGGGAATC ATCACGCGCA AGCTCAACGT TCTCGACGAG
ACGGAAGTCA AGGCAATCGT CGCTGAAATC GGGCAGGTCG ACATTCTGTT CAACTGTGCG
GGCGTCGTTC ACGGCGGCAC AATTCTTGAG ATGAAGGACG AAGATCTCGA TTTCGCAGTT
AATCTCAATG TCAAGGCGAT GATTCGCACC ATCCGTGCAA TATTGCCGGG CATGTTGGAA
CGCAAGGACG GCGCTATCAT CAATATGGCC TCCGTTGCAT CGAGCGTTAA GGGTGTGCCG
AACCGCTTTG CCTATAGCGT CACGAAGGCT GCGGTCATCG GGCTGACCAA GGCCGTTGCT
GCCGATTATG TCACCAAAGG CATCCGCTGT AACGCGATCT GCCCCGGCAC GGTCGAAAGC
CCGTCGCTGC AGGATCGTCT CCGCGCACAG GGGAATTATG AAGAGCAGCG TGCGGCCTTT
ATTGCTCGTC AACCGATTGG CCGTATAGGC CAGCCTGAAG AGATCGCCGA TCTCGTCGTC
TACCTCGCTG GCGCCACTTA TACGACCGGC CAAGCGTACA ATATCGACGG CGGCTGGACG
ATTTAA
|
|---|
| Protein sequence | MWCYLAATSC LSNGRLKMTI RFDGKTALIT AAAQGIGRAS ALAFAEAGAK VYATDINMGA
LKEIEGVSGI ITRKLNVLDE TEVKAIVAEI GQVDILFNCA GVVHGGTILE MKDEDLDFAV
NLNVKAMIRT IRAILPGMLE RKDGAIINMA SVASSVKGVP NRFAYSVTKA AVIGLTKAVA
ADYVTKGIRC NAICPGTVES PSLQDRLRAQ GNYEEQRAAF IARQPIGRIG QPEEIADLVV
YLAGATYTTG QAYNIDGGWT I
|
|---|
| |