| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3161 |
|---|
| Symbol | |
|---|
| ID | 4181821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | - |
|---|
| Start bp | 3430521 |
|---|
| End bp | 3432119 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638069054 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_675698 |
|---|
| Protein GI | 110635490 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCTC GCGTTCTCGT TTCCGACAAG CTTTCCCCGA CCGCGGTCGA CATCTTCCGT
CAGCACGGCG TGGAGGTGGA TTACCAGCCG GACCTCGGCA AGGATAAGGA CAAGCTTCTT
TCCGTCATCG ACCAGTATGA CGGCCTCGCC ATTCGTTCCG CCACGAAGGT GACGGAAAAG
CTGATCGCCG CCGCCACAAA TCTGAAGGTG ATCGGGCGTG CGGGTATCGG CGTCGATAAT
GTCGATATCC CCGCCGCGTC GCGGCGAGGC ATCATCGTGA TGAACACGCC TTTCGGCAAT
TCCATCACCA CGGCTGAGCA CGCTGTCGCC ATGATCTTTG CCGTGGCGCG GCAGATCCCC
GAAGCCAATG CTTCCACCCA TGCGGGCAAG TGGGAGAAAA ACCGCTTCAT GGGGGTGGAG
ATCACCGGCA AAACGCTGGG CGTAATCGGC TGCGGCAATA TCGGCTCGGT GGTCGCAATG
CGCGCCATCG GCCTCAAGAT GCATGTGATT GCCTACGATC CGTTCCTTTC GGAAGACAGA
GCGGAGGAAC TGGGCGTGGA GAAGGTGGAG CTCAACGAGC TCTTCGCCCG CGCCGATTTC
ATTACCCTGC ATACTCCGCT GACCGAAAAG ACGCGCGGCA TCATCAATGC GGCTGCGATC
GCCAAGATGA AAGACGGTGT GCGCATCGTC AATTGCGCGC GCGGCGGCCT CATTGTCGAA
GCCGACCTGG TCGAGGGGCT GAAATCCGGC AAGGTGGCGG GCGCCGGCAT CGACGTTTTC
GAGAACGAGC CGGCGACCGA GAACCCGCTC TTCAACCTGC CCAACGTGGT CTGCACGCCG
CATTTGGGCG CCTCTACCAC CGAGGCGCAG GAAAATGTGG CGCTGCAGAT TGCCGAGCAG
ATGTCGGAGT ACCTCATCAA AGGCGCTGTG ACCAACGCGA TCAACATGCC TTCCATCACC
GCCGAGGAAG CGCCGCGTCT TAAGCCTTTC ATCAAGCTGG CCGAAGTGCT GGGCGCGTTC
GTGGGCCAAG TGACCGACGA GCCGATCGCG GGCGTGGAGA TACTTTTCGA CGGCTCAACC
GCCGCCATGA ATACCCGAGC CCTCATCAGT GCCGCACTTG CCGGCCTGAT CCGCCCGCAG
GTGAATGACG TCAATATGGT CTCCGCCCCC ATCATGGTAA AGGAGCGCGG CATCATCGTC
TCGGAGGTGA AGCGCGACAA GTCGGGCGTG TTCGACGGCT ATATCAAGCT GACGGTAAAG
ACACCGGAGC GGACGCGCTC CATCGCCGGT ACGGTGTTTT CCGACGGGAA GCCCAGGTTC
ATCCAGATCA AGGGCATCAA TCTTGACGCG GAAGTAGGCG AGCACATGCT CTACACCACG
AACAATGACA CGCCTGGCAT TATCGGCCAG CTCGGCACAA TCTGCGGCAA GCACGGGGTG
AACATCGCCA ATTTCCAGCT CGGCCGGAAT CGGCCCGGCG GCGATGCCAT CGCGCTGCTT
TATCTCGATG CCCCGTTTCC GCAGCCCGTA CTGGAAGAGC TCAAGTCCAC CGGCTCTATT
ATTTCGGCCA AGCCGCTGCG GTTCGACGTC GGCAACTGA
|
|---|
| Protein sequence | MAPRVLVSDK LSPTAVDIFR QHGVEVDYQP DLGKDKDKLL SVIDQYDGLA IRSATKVTEK
LIAAATNLKV IGRAGIGVDN VDIPAASRRG IIVMNTPFGN SITTAEHAVA MIFAVARQIP
EANASTHAGK WEKNRFMGVE ITGKTLGVIG CGNIGSVVAM RAIGLKMHVI AYDPFLSEDR
AEELGVEKVE LNELFARADF ITLHTPLTEK TRGIINAAAI AKMKDGVRIV NCARGGLIVE
ADLVEGLKSG KVAGAGIDVF ENEPATENPL FNLPNVVCTP HLGASTTEAQ ENVALQIAEQ
MSEYLIKGAV TNAINMPSIT AEEAPRLKPF IKLAEVLGAF VGQVTDEPIA GVEILFDGST
AAMNTRALIS AALAGLIRPQ VNDVNMVSAP IMVKERGIIV SEVKRDKSGV FDGYIKLTVK
TPERTRSIAG TVFSDGKPRF IQIKGINLDA EVGEHMLYTT NNDTPGIIGQ LGTICGKHGV
NIANFQLGRN RPGGDAIALL YLDAPFPQPV LEELKSTGSI ISAKPLRFDV GN
|
|---|
| |