| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_2011 |
|---|
| Symbol | |
|---|
| ID | 4182804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | - |
|---|
| Start bp | 2158643 |
|---|
| End bp | 2160076 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638067907 |
|---|
| Product | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase |
|---|
| Protein accession | YP_674569 |
|---|
| Protein GI | 110634361 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.622004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTTC TATGGACTTC GGACGACCTT GTGGCGGCTG TCGGCGGCCG CCCCTTCGGG
GCGCTGCCCG AAGGCGTGAC GGGCATTTCC ATCGACAGCA GAACCCTCCA GCGTGGCGAA
GCCTTTTTTG CCATCAAGGG TGACCGTTTC GACGGGCACG ACTTTGCCAC CCTGGCCATG
GCCGCCGGCG CCGGCCTGCT CGTCATTTCG GAGGAAAAGC TTCCGGCGCT GGGGCGGCTT
ACCGTGCCGA AGGTCGTGGT TCCCGATGTG CTGAAGGCGC TGCGCGACCT TGCCGCCGCC
GCCCGCGCGC GCAGCCGGGG CAAGGTGATC GCCGTCACCG GTTCAGCGGG CAAGACCACC
ACCAAGGAGA TGCTGCGCCA CGCTCTCTCG AGCGTGGGGA CGGTGCATGC CGCCGCCCGC
TCCTTCAACA ATCATTGGGG TGTGCCCCTC TCGCTCGCCC GTCTGCCTGC CGGTGCAGAT
TTCGCCATTT TCGAGATCGG GATGAACCAT GCCGGGGAGA TCGAGCCGCT GACGCAGCTC
GTAAAACCCC ATATAGCGAT CGTTACGTTG ATTGCGGCCG CGCATCTCGG CCATTTTAAA
AGCCTGGACG AGATCGCCGA GGCCAAGGGC GAGATCTTTG CCGGCGTGGT CCCCGGTGGC
CACGCGATCA TCAACCGGGA CGACCAGCGC TTCAAACTTC TTGCCGATAT GGCGGCCGAA
GCGGGTATCA GGAATGTCTG GGGCTTCGGC GAGAATGTGC GTTCCCATTT CCGCCTGGCC
CAGCAAGAGC CCCAGGGCGA TCATTCGGTG GTCACGATAA AGGTCGCCGG TCAGGAGCTC
ATCGGCCGGA TCGGCGCGCC CGGGCGGCAC ATGGTGCAGA ATGCTCTCTC GGTGATCGGC
GCGGGATATC TCGCCGGCGC GGACGTGTCG AAGCTTCTTG CCGCGCTCGG CGATTTCTCT
GCCGAGGCGG GAAGGGGCAA GCTCCATCAT CTGGGGATCG GCGAGGGCAT GTTCACCCTC
ATCGATGAAA GCTACAACGC CAATCCCGCC TCCATGAAGG CAGCCTTGCA GGTGCTCGAC
AGCTCGCCCG TTTCGAACGG GGGGCGCCGC ATCGCCGTGC TTGGCGATAT GCTTGAGCTG
GGCGTCCATT CGGAAAAGCT GCACGCGGCG CTTGGCGATA TCATCGCCGG AACCAAGACG
GATATCCTCC TTCTGGCAGG GACGGAGATG AAGGCGCTTG CGGACAATGC GCCGCCCGGC
CGCCTCGTAG AGTACCGGCC GACAGTGGAG GAATTGCAGC CGCTTCTCCT TGAGCTGCTG
CAGCCCGGAG ATGCGATCAT GGTGAAGTCG TCGAACGGCA TCGGCCTGTC CAGGCTGGTC
GACGTACTTT TGAAGAATTA TCCGGCGGCG GTCGATGAAC CGGGCCGGGT TTGA
|
|---|
| Protein sequence | MTLLWTSDDL VAAVGGRPFG ALPEGVTGIS IDSRTLQRGE AFFAIKGDRF DGHDFATLAM
AAGAGLLVIS EEKLPALGRL TVPKVVVPDV LKALRDLAAA ARARSRGKVI AVTGSAGKTT
TKEMLRHALS SVGTVHAAAR SFNNHWGVPL SLARLPAGAD FAIFEIGMNH AGEIEPLTQL
VKPHIAIVTL IAAAHLGHFK SLDEIAEAKG EIFAGVVPGG HAIINRDDQR FKLLADMAAE
AGIRNVWGFG ENVRSHFRLA QQEPQGDHSV VTIKVAGQEL IGRIGAPGRH MVQNALSVIG
AGYLAGADVS KLLAALGDFS AEAGRGKLHH LGIGEGMFTL IDESYNANPA SMKAALQVLD
SSPVSNGGRR IAVLGDMLEL GVHSEKLHAA LGDIIAGTKT DILLLAGTEM KALADNAPPG
RLVEYRPTVE ELQPLLLELL QPGDAIMVKS SNGIGLSRLV DVLLKNYPAA VDEPGRV
|
|---|
| |