| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_2004 |
|---|
| Symbol | ddl |
|---|
| ID | 4182797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | - |
|---|
| Start bp | 2150149 |
|---|
| End bp | 2151075 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638067900 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_674562 |
|---|
| Protein GI | 110634354 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AGCACGTGGC CGTGCTCATG GGCGGGTTCT CGTCAGAGAG GCCTGTTTCA
CTGTCTTCAG GCAATTCCTG CGCCGACGCC CTGGAGGCGG AGGGCTACCG CGTCTCGCGC
GTTGACGTCT CGCGTGATGT CAGCCGTGTC CTTTCTGAAT TGAAGCCCGA CGTCGCATTC
AATGCGCTGC ATGGTCCCTT CGGTGAAGAT GGTACCGTTC AGGGCGTATT GGAATATCTG
GGAATTCCCT ACACGCATTC GGGCGTGCTC GCTTCGGCTC TCGCCATGGA CAAGGACCTG
GCGAAGACCG TCGCTAAATC CGCCGGTATT CCAGTGGCTT CCTCCCGAGT CATGAACCGC
TTCGAGATCG GTGATAAACA TCCGATGGAG CCGCCTTATG TCGTCAAGCC GGTAGCCGAG
GGGTCAAGCT TCGGCGTGGT GATCGTTCGC GAGGGACAAT CGCATCCGCC GCAGGTCCTG
GGCTCTGCCG AATGGGGTTA TGGCGAGCGT GTCATGGTCG AGCGCTATAT CCCCGGGCGT
GAGCTCACCT GCGCGGTCAT GGGGGACCGG GTGCTCGGGG TCTGCGAGAT CGTTCCGGTC
GGGCACAGCT TCTATGATTA CGATTCGAAA TATGCTCCGG GCGGATCAAG GCATGTTTGT
CCGGCGGAAA TTTCACCGAA TATTTACCAA AAAATAGAAA GACTGGCCCT TAAGGCGCAC
CAAGCGATTG GTTGCCGGGG CGTGAGTCGT TCGGACTTCC GCTATGACGA CCGGCTTCCT
GGGGAAGAAG GGATCGTCTG GCTGGAGATC AACACGCAGC CTGGCATGAC ACCAACCTCC
TTGGTGCCGG ATATCGCCGC TCAGGCGGGG ATTGGCTTTG GGGCACTCTT GAGTTGGATG
GTGGAGGACG CGTCTTGTCC GCGGTGA
|
|---|
| Protein sequence | MKKKHVAVLM GGFSSERPVS LSSGNSCADA LEAEGYRVSR VDVSRDVSRV LSELKPDVAF
NALHGPFGED GTVQGVLEYL GIPYTHSGVL ASALAMDKDL AKTVAKSAGI PVASSRVMNR
FEIGDKHPME PPYVVKPVAE GSSFGVVIVR EGQSHPPQVL GSAEWGYGER VMVERYIPGR
ELTCAVMGDR VLGVCEIVPV GHSFYDYDSK YAPGGSRHVC PAEISPNIYQ KIERLALKAH
QAIGCRGVSR SDFRYDDRLP GEEGIVWLEI NTQPGMTPTS LVPDIAAQAG IGFGALLSWM
VEDASCPR
|
|---|
| |