| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_1702 |
|---|
| Symbol | |
|---|
| ID | 4182349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | - |
|---|
| Start bp | 1819343 |
|---|
| End bp | 1822846 |
|---|
| Gene Length | 3504 bp |
|---|
| Protein Length | 1167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638067594 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_674262 |
|---|
| Protein GI | 110634054 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGC TGATAGATCC CATCGGCCTT GCGCGCCGGA ACGGCCCCGC AATCGTTGAC
GGAGTTGCCG ACGGTTACGA GCCCTTTGCG CTGGCGCGCA TCTCCGCTGA AATTGCGCCT
GACGGGCCGC TGATCTTTGT GGTGCGCGAC GGGCAGCGCT TGCCGCTCAT CGCGGAGGCG
CTGCAGTTCG CAGCGCCCGG CCTGCCGGTG ATGACGTTGC CGGCCTGGGA CTGCCTGCCT
TATGACCGGG TCTCTCCCGG CGCCGATGCC GCCGCCCGCA GGCTCGATGC ACTTTCGGCC
ATGGCTGCCC TGAAAAAGAA TCCGCATCGC GCCGTGGTGC TGGTTAGCGC AAACGCGGTT
CTCCAGCGCA TGCCGCCGGC AAAGCACATC GCGGCACAGG GATTTCGCGC CAAGCCCGGC
AACCAGGTGG ACATGGAGGC GCTCATCGGG CGGCTGGAGA CGGCTGGCTT CGAGCGCGTT
CCCACGGTGC GCGATATGGG CCAATATGCC GTGCGCGGCG GCATTCTCGA CCTCTTCGCA
CCCGGCTGGG AAGAGGCGCT GCGGCTCGAT TTCTTCGGCG ACACGCTCGA TTCCATCCGT
GCTTTCGACG TGGCCACCCA GCGCACGACA GGTCAACGCA CCGAGGTGAT GCTGCAGGCC
ATGAGCGAGG TGATGCTGAC GCCGGACACG GTAAGCCGCT TCCGCCGCCA CTATATCGAG
ACGTTCGGTG CGCCCTCGCG CGACGACGCG CTCTATGCCG CGATATCGGA AGGGCGGCGC
TTCTCCGGCA TGGAGCACTG GCTGCCGCTC TTCTATGACG GGCTGGAGAC CGTGTTCGAC
TATCTGCCGG ACGCGCCGCT CGTCTTCGAC CATCTGGCGC AGGAGGCGGT GAACGAACGG
CACGCGCTGA TCAACGACCA TTATGAGGCG CGAAAGCGCC AGCTCTCCGA AGGCGCGGGG
CTTGGAGATT CTGTGCCCTA TAAGCCGATC GAGCCGCAGC AGCTCTATCT CGATCCGCAG
GAAATCTTAG CGGCGGCCGA AGCGCGGGCT TTCATTCAGC TCACGCCTTT CGCCACGCCC
GAGGCTGGCG GCGCCAAGGT GTTCCATGCG GGTGCTTTGG CGGGGCGCAG CTTCGCCGAG
CGCGCCGATC CTAACGCCAA TGTCTTCGAC CATGTGGTCA AGCATATCGG AGAAAGGCGG
GCGCACGGGA AGCATGTATT GATTGCCGGC TGGAGCGAGG GTTCGGCCGA CCGGCTGAGC
CAGATCCTAG CCGAGCATGG GCTAGGCGGC GTTGCGCGCG TGACAAGCCT GGGCGAGCTC
GCCAAATTGC CGAAAGGGCA GGCGGGGCTT GGGGTCCTGC CGCTGGAGAC GGGTTTCGAA
ACCCCGAAGC TGGTCGTTGT CGCGGAACAG GATATTCTAG GAGACCGGCT CGTGCGCCGC
TCCAAGCGGC GTAAGCGGGC GGCAGATTTC ATCTCCGAGG CAAGTGCCCT GTCGGCAGGC
GATATCGTCG TCCATGCCGA CCATGGCATC GGCCGTTTCG TCGGCCTCAA AACGATCGAA
GCGGCAGGGG CTCCGCACGA GTGCCTGGAA ATCCACTATG CCGGCGACGA CCGGCTTTTC
CTGCCGGTCG AAAATATCGA GCTACTGTCG CGCTATGGCT CCGACTCTGC GGAGGCAACG
CTCGACAAGC TCGGCGGTGG TGCATGGCAG TCGCGTAAGG CGAAGCTGAA GAAGCGCCTC
CTCGAAATGG CGGGCCAGCT GATCAAGCTT GCCGCCGAGC GGCAGATGCG CCCGGCAGCG
AAGATCATGC CGCCCGAGGG GCTTTATGGC GAATTCGCCG CACGCTTCCC TTATGAAGAG
ACGGACGACC AGCAGACCGC CATTGATGCT GTCATCGAGG ATTTCAGCTC CGGCCGGCCC
ATGGACCGAC TCGTTTGCGG CGATGTGGGC TTCGGCAAGA CCGAAGTGGC GCTCAGAGCC
GCATTCCTGG CGGCCATGGA GGGCCTTCAG GTGGCGGTGG TTGTGCCGAC CACGCTGCTC
GCCCGTCAAC ATTTCAAGAC CTTTCGCGAT CGCTTTGCGG GGCTTCCCGT GACCGTGCGG
CAGGCCTCGC GCCTCGTCAC GGCGAAGGAA CTCGCGGAGA CGAAAAAGGG GGTGGCGGAC
GGCACAGTCG ATATCGTTGT GGGCACGCAC GCTCTGCTTG GCAATTCGAT CCAGTTCAAA
AATCTGGGGC TGCTGATCAT CGACGAAGAG CAGCATTTCG GCGTGAAGCA CAAGGAGCGG
CTGAAGGAGC TGAAAGCGGA CGTGCACGTG CTGACGCTCT CAGCCACGCC GATCCCTCGC
ACGCTGCAGC TTGCGCTCAC GGGCGTGCGG GAACTCTCGC TGATTGCCAC GCCGCCGGTC
GACCGCATGG CCGTTCGCAC CTTTATCTCG CCCTTCGATC CGCTCGTCAT CCGCGAGACG
CTCCTGCGCG AGCGCTATCG CGGCGGCCAG AGCTTCTATG TCGTGCCGCG CATCTCGGAT
CTGGCGGAGG TGAAGGAATT CCTGGCGGAG CAGGTACCGG AGCTCAAGGT TGCGACCGCG
CATGGCCAGA TCGCCGCGGG TGAACTCGAC GACATCATGA ACGCCTTCTA TGACGGCAAA
TATGATGTGC TCCTCTCGAC CACGATTGTG GAATCGGGCT TGGATATTCC AACGGCAAAC
ACGCTGATCG TGCACCGGGC CGACATGTTC GGCCTGGCGC AGCTTTACCA GCTGCGCGGC
CGTGTGGGGC GCTCGAAGGT GCGTGCCTAT GCGCTCTTCA CGCTGCCGGC CAATCGCACG
CTCACACCGA CGGCCGAGCG GCGGCTGAAG GTGCTGCAGT CGCTCGACGC GCTGGGCGCC
GGGTTCCAGC TTGCAAGCCA TGACCTGGAT ATCCGCGGAG CCGGCAATCT TCTGGGAGAA
GAGCAGTCGG GCCACATCAA GGAAGTGGGC TACGAGCTCT ATCAGCAGAT GCTGGAGGAG
GCGGTGGCAG AGCTGCGGGG GACCGGCGAG ACGGCCGATA CAGGCTGGTC TCCGCAAATC
ACCGTCGGTA CAGCGGTCAT GATCCCCGAG CATTATGTGC CCGACCTCCA GCTTCGTCTC
GGCCTTTATC GCCGGCTTGG CGAGATCGAG ACGCCGGAGG AGATCGATGG TTTCGGCGCC
GAACTTATCG ACCGCTTCGG GCCGATGCCG GAGGAAGTGC AGCACCTTCT CAAGATCGTC
TACATCAAGG CGCTCTGCCG GCGGGCGAAT GTGGAGAAGC TCGATGCCGG GCCGAAGGGC
GTGGTGCTCC ATTTCCGCAA CAAGGAGTTC CCGGAACCGG CTGGCCTGGT TCGCTTCATC
GGTGAGCAGG GGCAGTTGGC CAAAATCAGG CCGGACCAAA GCGTGGTCTT CATCCGGGAC
TGGCCGACAC CGGAAAAGCG GCTTGCCGGG GCCGCTGTCG TGATGACGCA GCTTGTGCGG
CTGGTGGAGA AGCAGGCGGC CTAG
|
|---|
| Protein sequence | MNELIDPIGL ARRNGPAIVD GVADGYEPFA LARISAEIAP DGPLIFVVRD GQRLPLIAEA
LQFAAPGLPV MTLPAWDCLP YDRVSPGADA AARRLDALSA MAALKKNPHR AVVLVSANAV
LQRMPPAKHI AAQGFRAKPG NQVDMEALIG RLETAGFERV PTVRDMGQYA VRGGILDLFA
PGWEEALRLD FFGDTLDSIR AFDVATQRTT GQRTEVMLQA MSEVMLTPDT VSRFRRHYIE
TFGAPSRDDA LYAAISEGRR FSGMEHWLPL FYDGLETVFD YLPDAPLVFD HLAQEAVNER
HALINDHYEA RKRQLSEGAG LGDSVPYKPI EPQQLYLDPQ EILAAAEARA FIQLTPFATP
EAGGAKVFHA GALAGRSFAE RADPNANVFD HVVKHIGERR AHGKHVLIAG WSEGSADRLS
QILAEHGLGG VARVTSLGEL AKLPKGQAGL GVLPLETGFE TPKLVVVAEQ DILGDRLVRR
SKRRKRAADF ISEASALSAG DIVVHADHGI GRFVGLKTIE AAGAPHECLE IHYAGDDRLF
LPVENIELLS RYGSDSAEAT LDKLGGGAWQ SRKAKLKKRL LEMAGQLIKL AAERQMRPAA
KIMPPEGLYG EFAARFPYEE TDDQQTAIDA VIEDFSSGRP MDRLVCGDVG FGKTEVALRA
AFLAAMEGLQ VAVVVPTTLL ARQHFKTFRD RFAGLPVTVR QASRLVTAKE LAETKKGVAD
GTVDIVVGTH ALLGNSIQFK NLGLLIIDEE QHFGVKHKER LKELKADVHV LTLSATPIPR
TLQLALTGVR ELSLIATPPV DRMAVRTFIS PFDPLVIRET LLRERYRGGQ SFYVVPRISD
LAEVKEFLAE QVPELKVATA HGQIAAGELD DIMNAFYDGK YDVLLSTTIV ESGLDIPTAN
TLIVHRADMF GLAQLYQLRG RVGRSKVRAY ALFTLPANRT LTPTAERRLK VLQSLDALGA
GFQLASHDLD IRGAGNLLGE EQSGHIKEVG YELYQQMLEE AVAELRGTGE TADTGWSPQI
TVGTAVMIPE HYVPDLQLRL GLYRRLGEIE TPEEIDGFGA ELIDRFGPMP EEVQHLLKIV
YIKALCRRAN VEKLDAGPKG VVLHFRNKEF PEPAGLVRFI GEQGQLAKIR PDQSVVFIRD
WPTPEKRLAG AAVVMTQLVR LVEKQAA
|
|---|
| |