| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_1465 |
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| Symbol | |
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| ID | 4179328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chelativorans sp. BNC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008254 |
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| Strand | + |
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| Start bp | 1564810 |
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| End bp | 1566816 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638067355 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_674026 |
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| Protein GI | 110633818 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACAA AGGAAAAGGA AGAGGTCGAG ATCGAACGCG ACGGCACCGA TGGGCCGCTG
CTCGACCTTT CCGACGACGC AGTCAAGAAA ATGATCAAGC TCGCGAAGAA GCGCGGCTAT
GTGACCATGG ACGAGCTGAA TGCGGTGCTG CCTTCCGGTG AGGTGAGTTC CGAGCAGATC
GAGGACACGA TGGCCATGCT TTCGGACATG GGCATCAATG TCGTCGAGGA CGAGGAGGCG
GGCGAGGAAG CCGAGGCTGA CAGCGCGCCC GAAGAGGAAA GCGGTGAGCT GGCCGAGACC
GGCAGCGCCG TTGCCACCGT TGCCAAGAAA GAGCCGACCG ACCGCACCGA CGACCCCGTG
CGCATGTATC TGCGCGAGAT GGGTTCGGTG GAGCTGCTGT CGCGCGAAGG CGAAATCGCC
ATCGCCAAGC GCATCGAGGC CGGCCGCGAG ACCATGATCG CCGGGCTTTG CGAAAGCCCG
CTGACGTTCC AGGCGCTCAT CATCTGGCGC GAAGAGCTTA ACGACGGAAA GATCCTGCTG
CGCGAGATCA TCGATCTTGA GGCGACCTAT GCCGGCCCCG AGGGCAAGCA GGCGCCGGTG
ATCGCGCGGC CGGAAGATGT CGCCAGGCCC GCGCCCGAAG AGAAGCTGAT GCGGCGGGCG
CGCGATGACG ACGACATTAC CAATGTCGGC GGAGAGTCGC GGCCCGAGGA AGACGACGAG
GAGGAGGACG AGACGAACCT CTCCCTCGCT GCCATGGAGG CCGAGCTCAA GCCCGGCTTC
ATGACGACGC TCGACTTCAT CGCCGACACT TATTCCAAGC TGCGCAAGCT GCAGGACCAG
GAGGTGGAGA GCCGCCTGGG CGATTCCGAC AAGCTTTCGG CTGGTCAGGA GCGCCGGTCC
AAAGAGCTGA AGGACGAGCT CATCAAGGCG GTGAAGTCGC TCTCGCTCAA CAACCAGCGC
ATCGAGACGC TGGTCGAGCA GCTTTACGAT ATCAATAAGC GCCTGGTGCA GAACGAGCTG
AAGCTGTTCC GGCTTGCCGA GAGTTATGGC GTGAGGCGCG AGGATTTCCT CAAGGCCTAT
CAGGGTTCCG AGCTTGACCC GAACTGGGGT TCCACGGTGG CCGTCCTGCC GCAGCCCGGT
TGGAGGGACT TCGTCAAGCA CGAAGCCGAC ACGATCGAGG CCCTTCGCTC CGAGATCCAG
AATCTTGCGC AGGAAACCGG TATTTCGATT GGCGAGTTCC GCCGCATCGT CAATCAGGTT
CAAAAGGGCG AGCGCGAGGC GGCTATCGCC AAGAAGGAGA TGGTGGAGGC CAATCTGCGC
CTGGTCATCT CCATCGCCAA AAAATACACC AACCGTGGCC TGCAGTTCCT TGACCTGATC
CAGGAAGGCA ATATCGGCCT CATGAAGGCC GTGGACAAGT TCGAGTATCG CCGCGGCTAT
AAGTTCTCGA CCTATGCCAC CTGGTGGATC AGGCAGGCGA TCACCCGTTC GATCGCCGAT
CAGGCGCGGA CGATCCGCAT CCCTGTGCAT ATGATCGAGA CGATCAACAA GATCGTGCGC
ACCTCGCGCC AGATGCTGCA TGAGATCGGC CGGGAGCCGA CGCCGGAAGA ACTCGCCGAA
AAGCTCGCAA TGCCGCTTGA GAAGGTGCGC AAGGTTCTCA AGATCGCCAA GGAGCCGATC
AGCCTCGAAA CGCCTGTGGG CGATGAGGAG GATTCGCATC TCGGCGATTT CATCGAAGAC
AAGAGTGCGA TCCTGCCGAT CGACGCGGCA ATCCAGGCGA ACCTTCGCGA GACGACGACG
CGCGTTCTTG CTTCGCTCAC TCCGCGCGAG GAACGCGTGC TCCGCATGCG CTTCGGCATC
GGAATGAACA CCGATCACAC GCTTGAGGAG GTGGGCCAGC AATTCTCGGT CACACGCGAG
CGCATTCGCC AGATCGAGGC GAAGGCGCTG CGCAAGCTCA AGCATCCGAG CCGCAGTCGC
AAGCTGCGCA GCTTCCTGGA CAGCTGA
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| Protein sequence | MATKEKEEVE IERDGTDGPL LDLSDDAVKK MIKLAKKRGY VTMDELNAVL PSGEVSSEQI
EDTMAMLSDM GINVVEDEEA GEEAEADSAP EEESGELAET GSAVATVAKK EPTDRTDDPV
RMYLREMGSV ELLSREGEIA IAKRIEAGRE TMIAGLCESP LTFQALIIWR EELNDGKILL
REIIDLEATY AGPEGKQAPV IARPEDVARP APEEKLMRRA RDDDDITNVG GESRPEEDDE
EEDETNLSLA AMEAELKPGF MTTLDFIADT YSKLRKLQDQ EVESRLGDSD KLSAGQERRS
KELKDELIKA VKSLSLNNQR IETLVEQLYD INKRLVQNEL KLFRLAESYG VRREDFLKAY
QGSELDPNWG STVAVLPQPG WRDFVKHEAD TIEALRSEIQ NLAQETGISI GEFRRIVNQV
QKGEREAAIA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY
KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKIVR TSRQMLHEIG REPTPEELAE
KLAMPLEKVR KVLKIAKEPI SLETPVGDEE DSHLGDFIED KSAILPIDAA IQANLRETTT
RVLASLTPRE ERVLRMRFGI GMNTDHTLEE VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR
KLRSFLDS
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