| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_0792 |
|---|
| Symbol | |
|---|
| ID | 4181052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | + |
|---|
| Start bp | 878663 |
|---|
| End bp | 880441 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638066672 |
|---|
| Product | type I secretion system ATPase |
|---|
| Protein accession | YP_673357 |
|---|
| Protein GI | 110633149 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTCCA AAGATCAATC GACGGCAACA ACGAGACGCA AAAGCGCCGA GAAGCTCACC
AGCGGCTTTC GAGCCGTCTG CGTTTTTCTG TTTGGGATGT CCGGCATCAT CAACATCCTC
GCGCTTACCG GCGCATTCTA CATGCTTCAG ATCTACGACA GGGCCTTGGC AAGCGGCAGC
GTGCCGACTC TGTTGGCGAT TTCCGCGCTC GCCCTCGGCC TCTACACTTT CCAGGGTTTG
TTTGACGTCC TCCGCTCGCA AATTCTTGTG AGGATGGGCG CACGGCTCGA TCAGAGAATC
GCGCCACTAG CGCATCAGGT CGCGGTCGAT ATGCCGCGTT TCGGCTTTTC GACGGCGGAA
TCGCTAGAAC GTGGACGCGA TGTGGATACG GTAAGGGGGT TCCTCGGCAG CCAAGGCCCG
ATGGCCTTGT TCGACCTGCC CTGGATGCCG CTGTTCCTGG CTTTCGTCTA CATCCTGCAT
CCGTTGCTCG GCGCCCTTAC GATCGCCGGC GCGTTTATCC TGACCACCCT CACACTCATA
ACCGAATTGA TGACGCGTCG GCTGGCCAGC GCCACCCACA GCGCTGTGGT GTCGCGTAAC
GCGATCGCCG ACTCCAACGC GCGCAATGCC GAAATCCTGA AGGCAATGGG CTTTGCCCGG
CGAGCCGTCG AGCGGTTCAA CCGTGCCAAT GAGGAGCACC TTGAGCTTCA GACGCGGACT
AACGACATCA GCGGAACCCT CGGCGCCATC TCACGCGTGC TGCGCATGAT CCTTCAGTCT
GCGGTGCTCG GGCTGGGCGC TCTCCTGACC ATGAATGGCG AGTTGTCGGC CGGGGCAATC
ATCGCCGCTT CCGTGGCCTC GGCGAGAGCA TTGGCGCCGA TCGACCTCGC CATCGCCAAC
TGGAAGAACG TCGTCTCGGC AAGATCGGCC TTCCAGCGCC TGAAGGAAAC GGTAGTGGCG
CTTGCGTCGG GCGATGAGCC GATGCAGCTC CCAGCGCCCC GGAACTCCCT CAAGGTAGAG
AACATCACCG TTGCCGCGCC CGGATCGGGC CGGGTCCTCC TGAGCGATGT CAGCTTCGAG
TTGAAGGCTG GCCAAGCGCT GGGTGTCATC GGGCCGAGCG GCGGCGGCAA GACAACGCTT
GCGCGGGCGC TTACCGGCAT CTGGCCGGTC CTGCGCGGAA GTGTGCGTCT TGACGATGCT
GAACTGACGC AGTGGAACGA CGAAAAGCTG GGAGCTTTCA TCGGTTACCT GCCGCAGGAG
GTTGCCTTGC TGGACGCCTC CATCGAAGAG AATATATCCC GGTTCCAGGA AGAACCGGAT
GCCCGCGCCA TCGTCGAAGC GGGGAGAGCG GCAAGCGTCC ACGAGATGAT CGTGCGGCTT
CCGGACGGCT ACAGGACCGG GCTGGGCCCG CTCGGCGTGT CTCTTTCCGG CGGTCAGCGG
CAGCGTATCG GACTAGCCCG CGCGCTATAC GGCAAACCGT TCCTGGTCGT CCTGGATGAA
CCCAATTCAA ATCTCGACGG CGAGGGCGAG GCTGCGCTGA CGGCCGCAAT CGAGGGCGTA
AAGGCCCGCG GGGGGATCGC CGTCGTCATA GCACATCGGC CTAGCGCACT TGCAGCCGTG
GATCTCGTTG CGGTCGTGCA GAACGGGCGC CTTACAGGTT TCGGGCCGAA GCATGACATC
CTTTCCGGCG TTTCCAGACG CGAGGCCGTT GCAGCCGATG GTTCGTCTGA CACGAACGAC
AAGAAGGAGC GCGCTGTATC GGCGCGGGTG TTGGCATGA
|
|---|
| Protein sequence | MRSKDQSTAT TRRKSAEKLT SGFRAVCVFL FGMSGIINIL ALTGAFYMLQ IYDRALASGS
VPTLLAISAL ALGLYTFQGL FDVLRSQILV RMGARLDQRI APLAHQVAVD MPRFGFSTAE
SLERGRDVDT VRGFLGSQGP MALFDLPWMP LFLAFVYILH PLLGALTIAG AFILTTLTLI
TELMTRRLAS ATHSAVVSRN AIADSNARNA EILKAMGFAR RAVERFNRAN EEHLELQTRT
NDISGTLGAI SRVLRMILQS AVLGLGALLT MNGELSAGAI IAASVASARA LAPIDLAIAN
WKNVVSARSA FQRLKETVVA LASGDEPMQL PAPRNSLKVE NITVAAPGSG RVLLSDVSFE
LKAGQALGVI GPSGGGKTTL ARALTGIWPV LRGSVRLDDA ELTQWNDEKL GAFIGYLPQE
VALLDASIEE NISRFQEEPD ARAIVEAGRA ASVHEMIVRL PDGYRTGLGP LGVSLSGGQR
QRIGLARALY GKPFLVVLDE PNSNLDGEGE AALTAAIEGV KARGGIAVVI AHRPSALAAV
DLVAVVQNGR LTGFGPKHDI LSGVSRREAV AADGSSDTND KKERAVSARV LA
|
|---|
| |