Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Meso_4340 |
Symbol | |
ID | 4178520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chelativorans sp. BNC1 |
Kingdom | Bacteria |
Replicon accession | NC_008242 |
Strand | - |
Start bp | 243254 |
End bp | 244111 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638059235 |
Product | conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_665957 |
Protein GI | 110347139 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0413275 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGAAAAC GATCGTTCCT TGCCGTGGCC ATCATCGCGG CACTGACCGC ATTCCCTGTT CAGACCCTGG AGATTCCGAC CAGCGCGCAG CAGGACAATC GCGTGCGTTT CGTCAGCTAC CAACCCTACA ATATCACCCG CATCGTCGGC ACGATCCGTT CTTCGGTCCA GGTGGAGTTC GCGCCAGACG AGGAAATCGC TCATGTGGCA CTCGGCAATA CCGTTGCCTG GGAAGTCGCA CCTGCCGGCC ACATCCTGTT CCTCAAACCA CGCGAGAACC AACCCGCCAC CAACATCTCG GTTGTGACGA CACGGCGCGA CGGCTCCAAG CGCAGCTATC AGATGGAATT GGTCGTTCGA GACGGGTCGG TCGATGCCGG GCAAAATACC TATTTCTATG TGAAGTACCG TTATCCAGCC GATGAAGCAG AGCGGCGACG CCTCGAGGAT GAGGCGAAGA AGCGTGCGGC CGAGGCTGGT TATGCCGATC AGGTCCTCGG CATCCATGAA CAATACGGCC CACGAAACTG GCGTTATTCG GCGCAAGGCT CCGCCGCAAT CGAACCGCAG GCGGTCTACG ATAATGGCAA GGTGACGACC TTTGCCTTCA GCGGCAATCA GGAGATGCCC GCGATCTACA TAGAGAATTC CGACGGGACG GAAAGCCTGG TGCCGAAGAC GGTTCAGGGC GACCTCGTTC TGGTCCATGC GATCAGCCGC AAGTTTATCC TGCGGCGTGG ATCGGACACG CTCTGCATCT TCAACGAGGC CTATTCGCCG GTAGGCGTCG ATCCGGGAAC CAATACCACC TCGCCCTCGG TCGAACGAGT GGTGAAGGTT CCGGCCGCCG GACAATAA
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Protein sequence | MRKRSFLAVA IIAALTAFPV QTLEIPTSAQ QDNRVRFVSY QPYNITRIVG TIRSSVQVEF APDEEIAHVA LGNTVAWEVA PAGHILFLKP RENQPATNIS VVTTRRDGSK RSYQMELVVR DGSVDAGQNT YFYVKYRYPA DEAERRRLED EAKKRAAEAG YADQVLGIHE QYGPRNWRYS AQGSAAIEPQ AVYDNGKVTT FAFSGNQEMP AIYIENSDGT ESLVPKTVQG DLVLVHAISR KFILRRGSDT LCIFNEAYSP VGVDPGTNTT SPSVERVVKV PAAGQ
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