| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_4170 |
|---|
| Symbol | |
|---|
| ID | 4178644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008242 |
|---|
| Strand | - |
|---|
| Start bp | 69464 |
|---|
| End bp | 70495 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638059078 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_665801 |
|---|
| Protein GI | 110346983 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | [TIGR02788] P-type DNA transfer ATPase VirB11 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACGTGG CCTCCCCTGA GCTTGCGTCG GACAACCGGC ACTACTTTCT TTATCGCGCG
CTGGCGCCGC TGAAACCGTT CCTTGACGAT CGCGACGTCG TCGAGATTTC TGTCAATCGG
CCGGGACAGG TCTATGTGGA GCGCCTGGGC GCCGCGCACA TGGCGTTTCA TGAGATTAAG
GAGCTCACCA CGGCCGAGAT CGTCAACATC GGTGAGCGTG TGGCGGCCAG CACCAACCAG
TTCGTCAGCC CAGCAAACCC AATTCTCAGC GCAGCACTAC CCACCGGCGA GCGTATCCAA
GTCGTCTTAC CTCCAGCCGC CCCTGACGGC GGCACGCTGT CGATCCGCAA GCAGGTCATC
AGCAACTTCA CGCTCGAGGA TTATCGTGAC AGGGGATCGC TCGACCAGGT GACGGTTGCC
GTCGGCGGCC TCAGCGAGAT CGAGCAGGTG TTGATCGAGC AGCTCTCTGC CAAGGACATC
TACGGCTTCA TCCGCACAGC GATCGTCAAT CGCGTGTCGA TCCTGATCAG TGGCGGCACC
TCGAGTGGAA AGACGACGTT CCTCAACGCC TGCCTAAAAT CCGTTGATCC CCATGAGCGT
ATCATCACGC TGGAAGACAC GCGCGAGCTG TTCCCGCCAC AGAAAAATGC TGTTCACCTG
CTTGCATCGC GTGGGGACCA GGGAACTGCC AATGTGACGA TCCAGTCCTT GCTCGAGGCG
TCGCTGCGCA TGCGACCGGA CCGCCTCTTC GTGGGCGAGG TGAGGGGATC GGAGGCCTTC
GCGTTCTTGC GCGCCATCAA CACAGGTCAT CCCGGGTCTA TGTCTACGGT CCATGCCGAC
ACGCCGCTTG GTGCCTATGA GCAGCTCGCC ATGATGGTCA TGCAATCGGG TCTGTCGGCC
GCCTACCCGA AGGCGGATCT GATCTCCTAC ATCAAACAAG TCATCCCCAT CGTGATCCAG
TTGCGTAGGG AAGGGGGCCG ACGCGGCGTC TCGGAAATCT TCTTCGCGCG CGAACGAATG
GAAGTGCCAT GA
|
|---|
| Protein sequence | MNVASPELAS DNRHYFLYRA LAPLKPFLDD RDVVEISVNR PGQVYVERLG AAHMAFHEIK
ELTTAEIVNI GERVAASTNQ FVSPANPILS AALPTGERIQ VVLPPAAPDG GTLSIRKQVI
SNFTLEDYRD RGSLDQVTVA VGGLSEIEQV LIEQLSAKDI YGFIRTAIVN RVSILISGGT
SSGKTTFLNA CLKSVDPHER IITLEDTREL FPPQKNAVHL LASRGDQGTA NVTIQSLLEA
SLRMRPDRLF VGEVRGSEAF AFLRAINTGH PGSMSTVHAD TPLGAYEQLA MMVMQSGLSA
AYPKADLISY IKQVIPIVIQ LRREGGRRGV SEIFFARERM EVP
|
|---|
| |