Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4312 |
Symbol | |
ID | 4176102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 5184129 |
End bp | 5185760 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638057349 |
Product | 60 kDa inner membrane insertion protein |
Protein accession | YP_663865 |
Protein GI | 109900610 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.301696 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATCCC AACGCAGCTT TTTATTAATT GGCCTTGCCA TGGTCAGCTT TCTTTTATGG CAACAATGGC AAGTGGATTA TGGTCCTCAA CCTGCCCAGC CAGTAGAAAG TCAACAAACA ACGGGGAGCG ATGCCCCAAA TAGTAATGGC GATGTACCTA TTGCTACGCC AACGAATAAA AGTGCGCTAC CAACTCAAAG CGTAGTTGGT AAGGTCATAT CTGTGACTAC CGACACGTTA CAACTAAGCA TCAATACCGT AGGTGGTGAT GTTATTTCAG CAAACTTGCT TAAATACCCA CTTGAACAAG GTTCACAGGG TACGTATAGC TTACTTCGCC CAAGCGGCCC AACGATTTTT GTGGCTCAAA GTGGATTGGT CGGTACCAAT GGAATAGATA AAGGCTCACG ACCTACTTAT TCTGTAAGCC AAGATAGTTT CGTTATGGAA GGTGACTCGC TGACAGTCCC TCTAACGTAT ACAGCTAAAT CCGGTTTACT CGTGACTAAA GAATTTATAT TCAGTAAAAA CAGTCACGAA GTGAAAGTAA ATTATCACGT TGAGAATACC TCTTCAGATG TAAAAAGTGT TAAACAGTTC GGACAGTTAA AGCAAAGTAC AGCGGATCAA GGCGGCAGCA TGTTTATGCC AACTTATCGC GGTGGCGCAT TCTCCACTGA AGACGAGCGT TACGAGAAGT ACTCCTTTGA TGACATGCAA GACAAAAACC TGAATCAAGT TACTCCTGCT GGTTGGACAG CAATGATTGA GCATTATTTT GTTTCAGCGT GGGTACCACC ACAGGACCAA ACTAATAGCC TCTACAGTAA AATGACCCAG AACGGTAATG CGATTATCGG TTTTATTGGT CAATCTGTAG ATATAGAGCC AGGTCAAAGC GTTGATATTC AAAGCTCACT TTACCTTGGT CCTAAAGACC AAGATACCTT AGAAAAAATC GCGCGCGGCT TAGATTTAAC GGTTGATTAC GGATTTCTGT GGTGGATTTC TAAATATCTC TTCGCCTTCT TGCAGTTTAT TCACAGCTTA ATTGGTAACT GGGGTTTCTC TATCATCCTC ATCACTATCG TCGTTAAAGG TGCTATGTAC CCACTAACGA AAGCACAGTA TGAATCGATG GCGAAAATGC GTGCCTTGAA ACCCAAAATG GACGCGTTGA AAGAACGTTA TGGCGACGAC AAGCAGAAGA TGCAGCAAGC CATGATGGAA ATGTACAAGA AAGACAAGGT AAACCCTATG GGTGGTTGCT TCCCTCTTCT TTTACAAATG CCTATCTTTT TAGCCTTGTA TTGGGTGTTG TTAGAAAGTG TTGAATTACG TCACGCTAAC TTCATTTTCT GGATCACTGA TTTGTCTGTT AAAGACCCTT ACTTTGTCCT ACCGATATTA ACTGGCCTTA GTATGTACCT TCTACAGAAG CTGCAACCTA TGACGATGAC AGACCCAATG CAGCAGAAAA TAATGCAATT TATGCCTGTG GCTATGAGTT TGTTCTTCTT TATATTCCCA GCAGGTCTAG TGCTATATTG GTTAATCAGT AACATCATTA CCCTTATACA GGCGAAAATC ATTTATGCAT CAATGGAGAA GCGCGGTTTA AAAACCAAGT AA
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Protein sequence | MESQRSFLLI GLAMVSFLLW QQWQVDYGPQ PAQPVESQQT TGSDAPNSNG DVPIATPTNK SALPTQSVVG KVISVTTDTL QLSINTVGGD VISANLLKYP LEQGSQGTYS LLRPSGPTIF VAQSGLVGTN GIDKGSRPTY SVSQDSFVME GDSLTVPLTY TAKSGLLVTK EFIFSKNSHE VKVNYHVENT SSDVKSVKQF GQLKQSTADQ GGSMFMPTYR GGAFSTEDER YEKYSFDDMQ DKNLNQVTPA GWTAMIEHYF VSAWVPPQDQ TNSLYSKMTQ NGNAIIGFIG QSVDIEPGQS VDIQSSLYLG PKDQDTLEKI ARGLDLTVDY GFLWWISKYL FAFLQFIHSL IGNWGFSIIL ITIVVKGAMY PLTKAQYESM AKMRALKPKM DALKERYGDD KQKMQQAMME MYKKDKVNPM GGCFPLLLQM PIFLALYWVL LESVELRHAN FIFWITDLSV KDPYFVLPIL TGLSMYLLQK LQPMTMTDPM QQKIMQFMPV AMSLFFFIFP AGLVLYWLIS NIITLIQAKI IYASMEKRGL KTK
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