Gene Patl_4312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4312 
Symbol 
ID4176102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp5184129 
End bp5185760 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content42% 
IMG OID638057349 
Product60 kDa inner membrane insertion protein 
Protein accessionYP_663865 
Protein GI109900610 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.301696 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCCC AACGCAGCTT TTTATTAATT GGCCTTGCCA TGGTCAGCTT TCTTTTATGG 
CAACAATGGC AAGTGGATTA TGGTCCTCAA CCTGCCCAGC CAGTAGAAAG TCAACAAACA
ACGGGGAGCG ATGCCCCAAA TAGTAATGGC GATGTACCTA TTGCTACGCC AACGAATAAA
AGTGCGCTAC CAACTCAAAG CGTAGTTGGT AAGGTCATAT CTGTGACTAC CGACACGTTA
CAACTAAGCA TCAATACCGT AGGTGGTGAT GTTATTTCAG CAAACTTGCT TAAATACCCA
CTTGAACAAG GTTCACAGGG TACGTATAGC TTACTTCGCC CAAGCGGCCC AACGATTTTT
GTGGCTCAAA GTGGATTGGT CGGTACCAAT GGAATAGATA AAGGCTCACG ACCTACTTAT
TCTGTAAGCC AAGATAGTTT CGTTATGGAA GGTGACTCGC TGACAGTCCC TCTAACGTAT
ACAGCTAAAT CCGGTTTACT CGTGACTAAA GAATTTATAT TCAGTAAAAA CAGTCACGAA
GTGAAAGTAA ATTATCACGT TGAGAATACC TCTTCAGATG TAAAAAGTGT TAAACAGTTC
GGACAGTTAA AGCAAAGTAC AGCGGATCAA GGCGGCAGCA TGTTTATGCC AACTTATCGC
GGTGGCGCAT TCTCCACTGA AGACGAGCGT TACGAGAAGT ACTCCTTTGA TGACATGCAA
GACAAAAACC TGAATCAAGT TACTCCTGCT GGTTGGACAG CAATGATTGA GCATTATTTT
GTTTCAGCGT GGGTACCACC ACAGGACCAA ACTAATAGCC TCTACAGTAA AATGACCCAG
AACGGTAATG CGATTATCGG TTTTATTGGT CAATCTGTAG ATATAGAGCC AGGTCAAAGC
GTTGATATTC AAAGCTCACT TTACCTTGGT CCTAAAGACC AAGATACCTT AGAAAAAATC
GCGCGCGGCT TAGATTTAAC GGTTGATTAC GGATTTCTGT GGTGGATTTC TAAATATCTC
TTCGCCTTCT TGCAGTTTAT TCACAGCTTA ATTGGTAACT GGGGTTTCTC TATCATCCTC
ATCACTATCG TCGTTAAAGG TGCTATGTAC CCACTAACGA AAGCACAGTA TGAATCGATG
GCGAAAATGC GTGCCTTGAA ACCCAAAATG GACGCGTTGA AAGAACGTTA TGGCGACGAC
AAGCAGAAGA TGCAGCAAGC CATGATGGAA ATGTACAAGA AAGACAAGGT AAACCCTATG
GGTGGTTGCT TCCCTCTTCT TTTACAAATG CCTATCTTTT TAGCCTTGTA TTGGGTGTTG
TTAGAAAGTG TTGAATTACG TCACGCTAAC TTCATTTTCT GGATCACTGA TTTGTCTGTT
AAAGACCCTT ACTTTGTCCT ACCGATATTA ACTGGCCTTA GTATGTACCT TCTACAGAAG
CTGCAACCTA TGACGATGAC AGACCCAATG CAGCAGAAAA TAATGCAATT TATGCCTGTG
GCTATGAGTT TGTTCTTCTT TATATTCCCA GCAGGTCTAG TGCTATATTG GTTAATCAGT
AACATCATTA CCCTTATACA GGCGAAAATC ATTTATGCAT CAATGGAGAA GCGCGGTTTA
AAAACCAAGT AA
 
Protein sequence
MESQRSFLLI GLAMVSFLLW QQWQVDYGPQ PAQPVESQQT TGSDAPNSNG DVPIATPTNK 
SALPTQSVVG KVISVTTDTL QLSINTVGGD VISANLLKYP LEQGSQGTYS LLRPSGPTIF
VAQSGLVGTN GIDKGSRPTY SVSQDSFVME GDSLTVPLTY TAKSGLLVTK EFIFSKNSHE
VKVNYHVENT SSDVKSVKQF GQLKQSTADQ GGSMFMPTYR GGAFSTEDER YEKYSFDDMQ
DKNLNQVTPA GWTAMIEHYF VSAWVPPQDQ TNSLYSKMTQ NGNAIIGFIG QSVDIEPGQS
VDIQSSLYLG PKDQDTLEKI ARGLDLTVDY GFLWWISKYL FAFLQFIHSL IGNWGFSIIL
ITIVVKGAMY PLTKAQYESM AKMRALKPKM DALKERYGDD KQKMQQAMME MYKKDKVNPM
GGCFPLLLQM PIFLALYWVL LESVELRHAN FIFWITDLSV KDPYFVLPIL TGLSMYLLQK
LQPMTMTDPM QQKIMQFMPV AMSLFFFIFP AGLVLYWLIS NIITLIQAKI IYASMEKRGL
KTK