| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4310 |
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| Symbol | trmE |
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| ID | 4176100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5182145 |
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| End bp | 5183527 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057347 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_663863 |
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| Protein GI | 109900608 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.671502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGACAGTTG AGCAAAATAC TCCAGACCAA GACACCATCG TCGCCCAAGC AACCGCAAGT
GGGCGTGGCG GGGTTGGAAT AGTGCGCGTA TCAGGCTCGC TAGCAGCAAA AGTCGCCGAG
CAAATAATTG GGCATGTACC ACTCATTCGT AATGCCCAAT ACGTACCATT TAAGTCCAAT
ACCGGCGAAC CGCTTGACCA AGGTATAGCG TTATTCTTTA AAGCGCCCCA CTCCTTTACT
GGCGAGGATG TTTTAGAACT ACAAGGCCAT GGTGGCCAAG TTGTTTTGGA TATGCTCATC
AAAGCAACTC TACATGTTCC TAATGTGCGT TTAGCAAGGC CAGGTGAATT TAGTGAACGC
GCCTATTTAA ACGACAAACT AGATTTAGCC CAAGCTGAAG CCATAGCGGA TTTAATTGAT
GCCAGTTCAG AGCAAGCCGC TCGAGGGGCT CTACGTTCTT TACAGGGCGA ATTTTCAACA
CAAATTAACT CGCTTGTTGA GTTGCTAACG CATTTGCGTA TATACGTTGA AGCAGCAATT
GATTTCCCTG ACGAAGAAAT CGACTTTCTT AGTGACGGCA AAGTACAAAA TGACCTTAAG
GCAATAACGA AACAATTAAG CTCAGTAAAA AGCCAAGCCC GACAAGGCAG TTTGCTGCGA
GAAGGTATGC GCGTTGTTAT TGCTGGTCGA CCCAATGCAG GCAAATCGAG TTTATTGAAT
GCTTTAGCGG GGCGTGACGC AGCAATTGTT ACCGCAATAG CAGGCACCAC ACGTGACGTG
TTGAAAGAGC ACATCCACAT TGATGGCATG CCACTGCATA TTATCGACAC TGCTGGCCTT
AGAGACAGCT CAGATGAAGT AGAACGCATT GGCATTGAAC GCGCTTGGCA GGAAATTGAG
CAAGCAGATC GTGTTTTGTT CATGTTAGAC AGTACCGAAA CCCATGAAAA CGACCCATAT
AAAATTTGGC CAGAATTTAT GCGCCGCTTA CCGAAAAATA TGGGGCTAAC CGTTATTCGT
AACAAAGCGG ATCTCTCTGG TGAAAATGTT GGGAAGGTAC AATACGATGA CTATCCGGTT
TTCCAACTCT CAGCGAGTCA CAAACAAGGC ATAGAGGTAC TGGCAGAGCA CCTTAAGGAA
TGCATGGGTT TTCATTCATC AAATGAAGGT CAATTCATCG CAAGGCGGCG CCATATTGAT
GCTATTGAGC GAGCAGAAGA GCATTTATTA TTAGGTAAGC AGCAATTAGA AGACAACCTA
GCGGGTGAGT TGTTAGCTGA AGAACTGCGC CTAGCCCAAG CATATTTGAG TGAAATAACC
GGTGAATTCA GTTCTGATGA CTTGCTAGGC AAGATATTCT CATCTTTCTG CATAGGTAAA
TAA
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| Protein sequence | MTVEQNTPDQ DTIVAQATAS GRGGVGIVRV SGSLAAKVAE QIIGHVPLIR NAQYVPFKSN
TGEPLDQGIA LFFKAPHSFT GEDVLELQGH GGQVVLDMLI KATLHVPNVR LARPGEFSER
AYLNDKLDLA QAEAIADLID ASSEQAARGA LRSLQGEFST QINSLVELLT HLRIYVEAAI
DFPDEEIDFL SDGKVQNDLK AITKQLSSVK SQARQGSLLR EGMRVVIAGR PNAGKSSLLN
ALAGRDAAIV TAIAGTTRDV LKEHIHIDGM PLHIIDTAGL RDSSDEVERI GIERAWQEIE
QADRVLFMLD STETHENDPY KIWPEFMRRL PKNMGLTVIR NKADLSGENV GKVQYDDYPV
FQLSASHKQG IEVLAEHLKE CMGFHSSNEG QFIARRRHID AIERAEEHLL LGKQQLEDNL
AGELLAEELR LAQAYLSEIT GEFSSDDLLG KIFSSFCIGK
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