| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4286 |
|---|
| Symbol | |
|---|
| ID | 4176076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 5155545 |
|---|
| End bp | 5158586 |
|---|
| Gene Length | 3042 bp |
|---|
| Protein Length | 1013 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638057323 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_663839 |
|---|
| Protein GI | 109900584 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor
[TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00048068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC ATATAAATTT CAAAAAGTCA TTGCTGACCA GCAGTATTTC AATGTTGCTA
AGTAGTGCAG CGATAATGCC TTCAGTTGCG CAAGGGCAAA TAGCACCAGA AGATGTAGAA
GTGATACAGG TGACAGGTAT TCGTGGCAGC TTATTACGCG CAATGGACAT TAAGCGTGAT
TCTAGTGGCA TAGTGGACGC AATTTCAGCA GAGGACATGG GCAAATTCCC TGATTCTAAC
TTAGCTGAAT CATTACAACG TATCACGGGC GTCTCTATTG ACCGCGCAAG TGGTGAAGGG
TCTCAAGTGA CGGTTCGTGG CTTTGGCGCC GCCAACAACT TAATTACCTT AAATGGCCGT
CAACTGCCGA CCACAACGGG TAGTAGAACG TTCGACTTTG CAAATATAGC GTCTGAAAGT
GTATCAGGCG TTGAGGTTTA TAAAACTGCT GATGCCAGCG TTACCTCAGG CGGGATAGGC
GCAACAATCA ACTTATCCAC TCACAGACCA TTCCATTCTC CCGGCACAAA AGCAACGTTT
GGCGCTAAAT TAGTGGACGA TAAATCTACA GACAAGGGTG ATGTCACACC CGAGATCAGC
GGTTTGTACT CGCAAACGTT TGCTGATGAA ACCGTTGGTA TTTCAATATC TGGTAGTTAT
CAAGAACGCG AAAGCGGCAT GCAGCAGTTT TTAGCAGACC AAGGTTATCG CGCGAGTGAA
TATACGAATA CCGGCTGGGG TGGTGTTCCT GCAGGCGCTG AAGGTGGCAT AAACCGCCCA
ACATCCGGCA TTTATTCTAA TCCTCAACAA CCAAGATATG TCTTCGAAGA GCGTCAACGA
GAACGCACAA ATGGGCAGCT AGTTTTACAA TTTAGACCAA CCGATAACCT TACTGCCACG
TTAGATTACA CACTTATTCG CAATGATATT GAAGAGCAAC ATACAGATGC GTCTGTTTGG
TTTAACTATG CTGGGGATCG AAGTGAATCC GTATGGGCTG GAGCACCTAA TGCTGTACCT
TTGATTTACT CTGAAATATA CGAAATCAAC AGCGAAGCTG ATCTGCAAGA TACCTCATTA
ACTGTTGGCG CTTGGGGCCG AGAAGAAAGC ATCGACTCTA TCGGACTGAA TCTAGACTGG
CAGGTCAGTG ATGCCTTGCA ACTCACACTA GATCACCACA GTTCAGAAGC TGAAATGAGA
GCGTCCGATC CGCGTCATGG CACACGTAAC AACTTGCAAC TCCCCTCTTA CACGCGAACC
CGAACCGGAC TAGACTTGAC AGGAGAGTTA CCAGGGATTG CTACAGGTAA CATAGAAAAC
TTTAATCCCA ACACCATGCG TTTATCGGGC AGTTGGTTTG CCAATGATTT TTACACCTCA
GAGATAGACC AAACCCAAGT CAGCGGTAAG TACTTTTTAA CTGACGAGGC CAGTATCGAC
TTCGGTGTAT CAGTCAACAC CGTCAATAAT CGCTACCGCC ATACCCAAGT GCAAAGAGCA
GATTGGGGCG GTGTAGGTGA AGAAGGGGAT TTCGCTGACG TTGACTGGAC GGAAGACACA
ATATTAGACA AATTCAACGC CAACGCTGGG AATTTTGAAG GAACAGCAAC CCAAGGCGAC
TATGACTTAT TCAACCGCAT TTGGTATGCA GATTTTGATG AAATTGTCAG AGCTGCAGAG
TTTGCTGATC CGGTTGCCAA CGTAGACACC GTATGGGGTG ATTGTTTAGC ACCTGAGGGC
GCATCTGCTG GCCCTAATGG AGAAGGACAT TTTTGTGCTT CAACCGATTG GGATGCCGAC
ACCAACCGCT TTACGGAAGA AGAAACCACA GCAGCATTTG TTCAATTGCA CTATGACGGC
GAATTAGGGG ACATGCCATA CGATGCTCAC TTAGGCATGC GCTTCGAAAA AACCGATGTT
ACCTCAACCG CTTCGGCACC GGGTTATAAC CGCGTTGAAT GGTCAGAAGA TACTTCGACT
GCGGTTACAG GACTAACAGG CATTGAAACC TTGAGCCAAG AAGCAGATTA CTCGCAGTTT
TTGCCAAGTT TCAACTTCAA TATATCAGTT ACAGATGATG TCATAATGCG CGCCGCTGTG
GGGAAAACCA TATCAAGAGC CGGTTACGGC GCACTGCAAG GGGGTACGAC TATCAATACC
TCAGGCAGTT TAAGTGGATA TTCTGGTACC TCAGGTAATC CGGGGCTTCG ACCTTTAGAG
TCTATAAACT ATGATCTTTC TGCTGAGTGG TATTACGATG AAGGAAGCTA TGTTTCTTTA
GGCTATTTCA GAAAAGATGT GACCAAATGG ATTACCACTG GTACAACCAA CTCAACTGTG
TTCAATCTTG CTAACCCATT GAATGGTGAA AAATTTGACG CCGCTGTTGC CGCCTTAGGC
GCCGGAGCGA GTAACCAACA AATTCGGACG TATATTTTCG AAAATTATGC TGATGACCCT
AACGTTACCC CTAATTTTGA CGAAAATGGC GAACTAGACG GCGGTATTAT TTTGGGTGAT
CCAGCCACCG ATAACACAGT CAACTTTAGA ATTAATGTTC CTGTCAATGG CGACACAGAA
CATACCATTG ATGGCATTGA ATTTAACGTT CAGCACCTGT TTGGTGAATC TGGCTTTGGC
GGTATCGCTA ACTACACTAT GGTGGATTCA GGTTTAAAAT ATGATAAATC GTCGTTAGGT
GATACCGAAT CCTTAGTGGG TTTGAGCGAT ACAGCCAACT TAGTTTTATT CTATGACAAA
GAGGGTTTGC AAGCGCGCAT TGCATACAAC TGGCGCGACG AGTTTTTAAA TGAGCGACGT
GTCAATGGGG ATTTAACAGC GCCCGTTTTT ACTGATACTT ATTATCAAAT TGACTTTAAC
TTAAGTTACG AAATAAAACA GCTAAAGGGA CTGACCGTAT TTTTAGAAGG TATTAACATC
ACCGATGAAT ATACCAATGA GTTTGGTCGG GACAGCCAAT TGATCTACAA ACTCACACAA
ACTGGTGCCC GATATAACAT TGGCGCTCGA TACACGTTTT AA
|
|---|
| Protein sequence | MNTHINFKKS LLTSSISMLL SSAAIMPSVA QGQIAPEDVE VIQVTGIRGS LLRAMDIKRD
SSGIVDAISA EDMGKFPDSN LAESLQRITG VSIDRASGEG SQVTVRGFGA ANNLITLNGR
QLPTTTGSRT FDFANIASES VSGVEVYKTA DASVTSGGIG ATINLSTHRP FHSPGTKATF
GAKLVDDKST DKGDVTPEIS GLYSQTFADE TVGISISGSY QERESGMQQF LADQGYRASE
YTNTGWGGVP AGAEGGINRP TSGIYSNPQQ PRYVFEERQR ERTNGQLVLQ FRPTDNLTAT
LDYTLIRNDI EEQHTDASVW FNYAGDRSES VWAGAPNAVP LIYSEIYEIN SEADLQDTSL
TVGAWGREES IDSIGLNLDW QVSDALQLTL DHHSSEAEMR ASDPRHGTRN NLQLPSYTRT
RTGLDLTGEL PGIATGNIEN FNPNTMRLSG SWFANDFYTS EIDQTQVSGK YFLTDEASID
FGVSVNTVNN RYRHTQVQRA DWGGVGEEGD FADVDWTEDT ILDKFNANAG NFEGTATQGD
YDLFNRIWYA DFDEIVRAAE FADPVANVDT VWGDCLAPEG ASAGPNGEGH FCASTDWDAD
TNRFTEEETT AAFVQLHYDG ELGDMPYDAH LGMRFEKTDV TSTASAPGYN RVEWSEDTST
AVTGLTGIET LSQEADYSQF LPSFNFNISV TDDVIMRAAV GKTISRAGYG ALQGGTTINT
SGSLSGYSGT SGNPGLRPLE SINYDLSAEW YYDEGSYVSL GYFRKDVTKW ITTGTTNSTV
FNLANPLNGE KFDAAVAALG AGASNQQIRT YIFENYADDP NVTPNFDENG ELDGGIILGD
PATDNTVNFR INVPVNGDTE HTIDGIEFNV QHLFGESGFG GIANYTMVDS GLKYDKSSLG
DTESLVGLSD TANLVLFYDK EGLQARIAYN WRDEFLNERR VNGDLTAPVF TDTYYQIDFN
LSYEIKQLKG LTVFLEGINI TDEYTNEFGR DSQLIYKLTQ TGARYNIGAR YTF
|
|---|
| |