| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4265 |
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| Symbol | |
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| ID | 4176055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5133104 |
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| End bp | 5134528 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638057302 |
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| Product | Nidogen, extracellular region |
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| Protein accession | YP_663818 |
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| Protein GI | 109900563 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.205144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGATT TCAAGAAGTT AGTAAAGGCC GTTACCCTCA GTGGTGTTAT GGCAACCAGT
ATTTCCTCTC TCTCGGCAAA CGCAAGTGTG TTACTGGAAG GTTGGGAGGG TGCAGGTGAG
TCAGGTTTTG GCCAAATAGC ACTAGAAAAA AATGATGATG GATCAAGCGG AGAAATTTTC
TTCAACGATT ATGAAGGCTT AGGTTTTGAC TCGGGCGTTA ACTTTTTCGG TCGTACTCAC
GATTCCTTCT ACGTAAACAA TAATGGCAAT ATTAGCTTCA ATGGCGCCGT GAGCTCTTTT
ACGCCAGAGG AATTTCCCAT TACTCGCTTT GGTGACAATG ACAATGACAA TGACAATGAC
AATGACGGCG GCGGATGTGA AGTAGACTGT ATTGAGATGC CTCAAGCGCA AACTAATTCA
GCATTTACCA CAACCGAAAA TGATGATATT CCAATGCCCG CTGATTTAAA TACGATTGCT
ATGATTGCCC CCTTTTGGGC TGATGTAGAC ACAGGTTGTG ACGACTGTGG TGACGTATTT
ATTGGCTCGC CGAATGCTGA AACCATGGTG ATTACATGGG ACAGTGTTGG CTTTTTCAAT
GAAGATAGCT CGCTAACGAA TACCTTTCAG TTAGTTCTGA TTGACCGTGC TGACACTGGT
GCTGGCAACT TCGATGTGGA GTTCCGTTAT GAAGACATTA ACTGGACCAC CGGTGATGCA
TCAGACGGTG AGAACGGCCT TGGTGGTACA CCTGCTCAAG CGGGTTATGA TGCTGGTGAT
GGCGTAAACT TCTTCACACT TCCAGGTTCA CGCACTGGTG AAGTCGTAAA CTTAGATACA
GCTGACAGCA ACACAGGTAC TGCGGGTATT TGGAAATTTG CCATTCGTGA TGGTGAATTA
CCGGGTGACA ACGCTGAAAA CCCGCTTATT CCAGTAATTA ATCCTGAAAC ACCAACTGAC
TACAACTTTG AATTCGTTAT TATCGAGCCT GAAACACCGA TTTTCATCGA CCCAGATGTA
GCGGTTGGTT ATGACTATAT CGTCAATAGC GGCCCTAGCA TTACCTCGGT TATGTTACCT
ACTGGTTTTG GCGATGATGT TTATGACCTT TGGTTGTGGG ATGCCGCCTT GATGGATTGG
TACGATACTG GGGAAGATTT GCTTGGAGGT GTAACGTTTG ACTTCACCAC CGCGGTTGAC
CGTTTCCGTA TTCTTGGTAT TGAGACTTCA GAAATGGTAG ATCCAACGGA TCCCAATGCA
TTTGTAACCG CATTGACCTT TGATGCAGCT GGCACAATTA ACATGAACCA AAATGCAATT
ACCGAATTCG TTGACGACCC TCAGGCGGTA TCTGCACCTG CTGGACTTGG TATCTTCGCG
TTATCTTTGT TGGTATTCTT ACGCGCAAGA AAGCGTCGCG CTTAA
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| Protein sequence | MFDFKKLVKA VTLSGVMATS ISSLSANASV LLEGWEGAGE SGFGQIALEK NDDGSSGEIF
FNDYEGLGFD SGVNFFGRTH DSFYVNNNGN ISFNGAVSSF TPEEFPITRF GDNDNDNDND
NDGGGCEVDC IEMPQAQTNS AFTTTENDDI PMPADLNTIA MIAPFWADVD TGCDDCGDVF
IGSPNAETMV ITWDSVGFFN EDSSLTNTFQ LVLIDRADTG AGNFDVEFRY EDINWTTGDA
SDGENGLGGT PAQAGYDAGD GVNFFTLPGS RTGEVVNLDT ADSNTGTAGI WKFAIRDGEL
PGDNAENPLI PVINPETPTD YNFEFVIIEP ETPIFIDPDV AVGYDYIVNS GPSITSVMLP
TGFGDDVYDL WLWDAALMDW YDTGEDLLGG VTFDFTTAVD RFRILGIETS EMVDPTDPNA
FVTALTFDAA GTINMNQNAI TEFVDDPQAV SAPAGLGIFA LSLLVFLRAR KRRA
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