| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4249 |
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| Symbol | |
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| ID | 4176039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5113618 |
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| End bp | 5115168 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057286 |
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| Product | threonine dehydratase, biosynthetic |
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| Protein accession | YP_663802 |
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| Protein GI | 109900547 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.423735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCA GTGCCCAAGA ATATTTAAAA AAGGTTTTAA TGTCGCCAGT GTATGACGTG
GCGGTAAACA GCGAGTTTGT CCATCTAGAC AAATTCTCCG CTGTTTTAGG GAATGATGTA
TGGCTTAAGC GAGAAGATCA GCAACCGGTT AAGTCGTTCA AATTGCGTGG TGCATATAAT
AAGATCAGTC ACTTAGATGA TGAAGCGCTA AACGCGGGGA TCATTACCGC ATCAGCGGGC
AACCACGCCC AAGGTATTGC TTATTGTGCC TCTCGCAAGA ATATTCAGGC CACTATTGTG
ATGCCAGAAA CCACCCCTGA CATTAAAGTG GACGCGGTGC GCAACTTCGG AGGTGCTAAC
GTCAACGTAG TGCTTCATGG TACTAGCTTC GACCAAGCCA GTGAAGAGTC TAAACGTTTA
GCTGCGTTGC ATGGGTATAC CATGATCCCG CCATTTGACG ACCCAGACGT TATTGCCGGG
CAAGGGACCA TTGCCAAGGA AATGCTTGAG CAAAACCCGA ATCTGGATAT CGTTTTTATC
GCAGTGGGCG GCGGCGGTTT AGCCGCTGGC ATGAGTGTGT ATTTAAAGCA GCTCAAGCCC
AGTATCAAAA TTGTCGCTGT AGAGTCCAGC GAATCTGCTT GTTTACAAGC TGCTTTAAAG
GCTGGTGAGC CTACTCCTTT GCCCTTTGTA GGGATTTTTG CAGACGGTGT AGCAGTGAAA
ACCATAGGTA CTGAAACATT TCGCTTGTGT CAGCAATACG TAGATGAAGT CATTACCGTT
AACAATGATG AGTTATGCAC GGCAATCAAA GATATTTTCG ATGATACCCG CGTGATTGCT
GAGCCAGCAG GCGCATTGTC TGTTGCAGCC ATGCGTAAAT ACGCTAGGCT AAATGACGTT
AAGGGTAAAG TCTTTGGTGG CGTGTTATGT GGCGCTAATA TTAATTTTCA CACTTTGCGT
TATGTGTCTG AACGCTGTGA ATTAGGTGAG CAAAAAGAAG CCGTATTTGC CGTTAAAATC
CCTGAGAAAA AAGGCGCGTT TAAGCACTTC TGCGAACTGC TAGGTGGTAA AACCATCACA
GAGTTCAACT ATCGTTTTTC AAGTGAAAAA GAAGCGCATA TTTTTGTGGG TGTGAAGTTG
CGAAGGGGCC AAGAAGAGTT TGCTGAGTTG ATGGCCACTT TGAGTGCAAA TGACTACCCT
TGTCTGGACA TGTCAGACAA TGAAATGGCA AAACTGCATG TGCGCTACAT GGTCGGTGGT
CGCCCCCCTG CTCTACTTCA TGAGCACTTG TTCTCATTTG AGTTTCCTGA ACAGCCAGGA
GCCCTAATGA CCTTCTTAAA AACCTTGGGC GAACGCTGGA ACATTACTTT GTTTCATTAC
CGTAACCATG GTGCTGCGGA AGGTTTAGTG CTAGCGGGGT TTGATTTCCC TGATAGCGAA
CGTGCTGATT TTGAGCAACA CTTAGGTCAA CTCGGCTACC AATACTCTGA AGAAACCGAA
AATCCCGCCT ATAAGTTTTT CTTATCAGAC GTGAACGGTA TTTTCAGCTA A
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| Protein sequence | MTTSAQEYLK KVLMSPVYDV AVNSEFVHLD KFSAVLGNDV WLKREDQQPV KSFKLRGAYN
KISHLDDEAL NAGIITASAG NHAQGIAYCA SRKNIQATIV MPETTPDIKV DAVRNFGGAN
VNVVLHGTSF DQASEESKRL AALHGYTMIP PFDDPDVIAG QGTIAKEMLE QNPNLDIVFI
AVGGGGLAAG MSVYLKQLKP SIKIVAVESS ESACLQAALK AGEPTPLPFV GIFADGVAVK
TIGTETFRLC QQYVDEVITV NNDELCTAIK DIFDDTRVIA EPAGALSVAA MRKYARLNDV
KGKVFGGVLC GANINFHTLR YVSERCELGE QKEAVFAVKI PEKKGAFKHF CELLGGKTIT
EFNYRFSSEK EAHIFVGVKL RRGQEEFAEL MATLSANDYP CLDMSDNEMA KLHVRYMVGG
RPPALLHEHL FSFEFPEQPG ALMTFLKTLG ERWNITLFHY RNHGAAEGLV LAGFDFPDSE
RADFEQHLGQ LGYQYSEETE NPAYKFFLSD VNGIFS
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