Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4247 |
Symbol | |
ID | 4176037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 5110273 |
End bp | 5110896 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638057284 |
Product | LexA repressor |
Protein accession | YP_663800 |
Protein GI | 109900545 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGTCCAC TAACTCCCAG ACAAGAAGAA GTCTTGCAAC TGATTAAAAC CACCATGCTA GAAACAGGCA TGCCGCCAAC ACGTGCAGAA ATAGCACGGC ACCTTGGTTT TAAATCGGCA AATGCGGCTG AAGAACACCT CAAGGCTCTG GCTCGTAAAG GAGCAATTGA GATCTTGCCC GGCACGTCAA GAGGTATCAG GCTCACTGAG CCTTTAGAAG ATCAATTAGA AGACCAAGGT TTGCCGCTTA TTGGTCGTGT TGCCGCCGGT GAGCCCATTT TGGCTCAAGA GCATGTTGAA ATGCATTACA AAGTTGACCC AAGTTTATTT AAACCCAGCG CTGATTTTTT ACTTAGAGTT AGCGGCATGA GTATGAAAGA CATTGGTATT TTGGATGGTG ATTTACTGGC CGTGCATAAA ACAACGGATG TGCATAATGG TCAGGTGGTA GTTGCGCGAG TAGATGAAGA TGTAACCGTT AAACGGCTTG AGCGAAAAGG TCGACAAGTC GTACTACATG CTGAAAACGA GGATTTCCAA CCTATTAAAG TCGATCTAGC GACGCAGCCT TTTAATATCG AAGGTATCGC TGTGGGTGTT ATTCGTAATG CTGACTGGAT GTAG
|
Protein sequence | MRPLTPRQEE VLQLIKTTML ETGMPPTRAE IARHLGFKSA NAAEEHLKAL ARKGAIEILP GTSRGIRLTE PLEDQLEDQG LPLIGRVAAG EPILAQEHVE MHYKVDPSLF KPSADFLLRV SGMSMKDIGI LDGDLLAVHK TTDVHNGQVV VARVDEDVTV KRLERKGRQV VLHAENEDFQ PIKVDLATQP FNIEGIAVGV IRNADWM
|
| |