Gene Patl_4247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4247 
Symbol 
ID4176037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp5110273 
End bp5110896 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content46% 
IMG OID638057284 
ProductLexA repressor 
Protein accessionYP_663800 
Protein GI109900545 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTCCAC TAACTCCCAG ACAAGAAGAA GTCTTGCAAC TGATTAAAAC CACCATGCTA 
GAAACAGGCA TGCCGCCAAC ACGTGCAGAA ATAGCACGGC ACCTTGGTTT TAAATCGGCA
AATGCGGCTG AAGAACACCT CAAGGCTCTG GCTCGTAAAG GAGCAATTGA GATCTTGCCC
GGCACGTCAA GAGGTATCAG GCTCACTGAG CCTTTAGAAG ATCAATTAGA AGACCAAGGT
TTGCCGCTTA TTGGTCGTGT TGCCGCCGGT GAGCCCATTT TGGCTCAAGA GCATGTTGAA
ATGCATTACA AAGTTGACCC AAGTTTATTT AAACCCAGCG CTGATTTTTT ACTTAGAGTT
AGCGGCATGA GTATGAAAGA CATTGGTATT TTGGATGGTG ATTTACTGGC CGTGCATAAA
ACAACGGATG TGCATAATGG TCAGGTGGTA GTTGCGCGAG TAGATGAAGA TGTAACCGTT
AAACGGCTTG AGCGAAAAGG TCGACAAGTC GTACTACATG CTGAAAACGA GGATTTCCAA
CCTATTAAAG TCGATCTAGC GACGCAGCCT TTTAATATCG AAGGTATCGC TGTGGGTGTT
ATTCGTAATG CTGACTGGAT GTAG
 
Protein sequence
MRPLTPRQEE VLQLIKTTML ETGMPPTRAE IARHLGFKSA NAAEEHLKAL ARKGAIEILP 
GTSRGIRLTE PLEDQLEDQG LPLIGRVAAG EPILAQEHVE MHYKVDPSLF KPSADFLLRV
SGMSMKDIGI LDGDLLAVHK TTDVHNGQVV VARVDEDVTV KRLERKGRQV VLHAENEDFQ
PIKVDLATQP FNIEGIAVGV IRNADWM