| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4245 |
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| Symbol | |
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| ID | 4176035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5107131 |
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| End bp | 5108729 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057282 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_663798 |
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| Protein GI | 109900543 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.780618 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAG TAACCGACAC GATCCATCAC GAAAACGATC ATCACGAGCA TCATGCGCCC
CCTTCAGGTA TTAAGCGCTG GTTGTACACG ACAAACCACA AAGACATAGG CACGCTGTAC
CTTTGGTTCG CATTTATCAT GTTCTTAACC GGCGGCGCGA TGGCGATGGT CATTCGGGCG
GAATTGTTTC AGCCGGGCCT GCAGATAGTT GAGCCTAACT TTTTCAATCA AATGACCACA
GTTCATGGCT TGATCATGGT GTTTGGTGCT GTTATGCCTG CTTTTACAGG GCTAGCTAAC
TGGTTAGTGC CTATGATGAT TGGCGCGCCA GACATGGCTT TGCCTCGCAT GAACAACTGG
AGCTTCTGGA TCTTACCCTT TGCGTTCTTG ATTTTACTGT CTTCGTTATT TATGGAAGGT
GGCGGTCCTG CATTTGGCTG GACGTTCTAC GCTCCTCTAT CAACTACGTA CAGTGGTGAC
AGTACTGCTC TGTTTGTTTT CTCGGTACAT ATCATGGGTA TTTCATCCAT TATGGGGGCG
ATTAACGTCA TAGTGACGAT CTTTAATATG CGCGCCCCAG GGATGACATG GATGAAAATG
CCGCTCTTTG TTTGGACGTG GTTAATAACA GCATTTTTGC TTATTGCGGT CATGCCTGTA
TTAGCCGGCG CAGTGACTAT GGTGTTAACA GATAAGTTTT TTGGTACTAG CTTCTTCGAT
GCCGCAGGTG GCGGCGACCC TGTGATGTTC CAGCATATTT TCTGGTTCTT TGGGCACCCT
GAGGTTTACA TCATGATACT GCCCGCCTTT GGCATTATCT CGCAAATAGT ACCGACCTTT
GCACGCAAAC GCTTATTTGG CTATGCCTCT ATGGTGTACG CCACGGCATC TATTGCATTG
CTGTCGTTTA TCGTCTGGGC TCACCATATG TTTACGACTG GGATGCCGGT CTTTGCTGAG
ATGTTTTTCA TGCTAGCCAC TATGCTGATA TCTGTGCCCA CCGGTGTGAA AGTATTTAAT
TGGGTAGCAA CTATGTGGCG AGGCTCCATG AGTTTTGAAG TACCTATGTT GTTTGCTCTA
GCGTTTATCG TGCTGTTCAC GATAGGTGGT TTATCTGGCT TGATGCTGGC GATAACGCCT
GTGGATTTCC AATACCATGA TACTTACTTT GTTGTTGCGC ATTTCCATTA CGTATTAGTG
ACGGGCGCCA TCTTCTCAAT TATGGCGGCG GTATATTACT GGCTACCCAA ATGGACAGGA
AAAATGTTTG ATATTACGTT AGCTAAATGG CATTTCTGGT GTTCATTGAT TTCTGTAAAT
GTATTGTTCT TCCCGATGCA TTTTGTTGGC TTGGCCGGTA TGCCAAGACG TATTCCAGAC
TATGCATTGC AGTTCGCTGA TTTTAATAAA TGGATAAGCT TAGGTGGATT TGCGTTTGGT
TTATCTCAAT TGATTTTCTT GGCGTTACTT ATTAAGGCAT GCCGTAAACA AGGTGACCCG
GTAAGTGACC AAGTTTGGGA AGGGGCAGAA GGTCTAGAAT GGGAAATACC TTCACCTGCT
CCATATCATA CGTTCGAAAC TCCGCCTGTT ATTAAATAG
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| Protein sequence | MSTVTDTIHH ENDHHEHHAP PSGIKRWLYT TNHKDIGTLY LWFAFIMFLT GGAMAMVIRA
ELFQPGLQIV EPNFFNQMTT VHGLIMVFGA VMPAFTGLAN WLVPMMIGAP DMALPRMNNW
SFWILPFAFL ILLSSLFMEG GGPAFGWTFY APLSTTYSGD STALFVFSVH IMGISSIMGA
INVIVTIFNM RAPGMTWMKM PLFVWTWLIT AFLLIAVMPV LAGAVTMVLT DKFFGTSFFD
AAGGGDPVMF QHIFWFFGHP EVYIMILPAF GIISQIVPTF ARKRLFGYAS MVYATASIAL
LSFIVWAHHM FTTGMPVFAE MFFMLATMLI SVPTGVKVFN WVATMWRGSM SFEVPMLFAL
AFIVLFTIGG LSGLMLAITP VDFQYHDTYF VVAHFHYVLV TGAIFSIMAA VYYWLPKWTG
KMFDITLAKW HFWCSLISVN VLFFPMHFVG LAGMPRRIPD YALQFADFNK WISLGGFAFG
LSQLIFLALL IKACRKQGDP VSDQVWEGAE GLEWEIPSPA PYHTFETPPV IK
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