| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4238 |
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| Symbol | |
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| ID | 4176028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5101880 |
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| End bp | 5102797 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638057275 |
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| Product | protoheme IX farnesyltransferase |
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| Protein accession | YP_663791 |
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| Protein GI | 109900536 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
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| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCAAAT CTGTTGGTGT TGCACCTCAT AACATAGTAA ATAAATCAGG CCTCCACTGG
CGTGATTATT ATGAGATGAC AAAACCTAAA GTGGTAATGT TGCTCCTACT GACCGCTTTG
GTAGGGATGT GTTTGGCGAG TGAAACTTGG ATCAGTTGGA AAATACTTTT GGCAGGTTTG
ACCGGCATTG GTTTTTTATC TTCTGCAGCA GCGGTTATTA ACCACGTAGT TGATCGTAAA
ATTGATGCGC AAATGGCGCG GACCTCGAAT CGCCCGATGC CTAAAGGCAA AGTTTCTCCC
CAGCGAGCGC TCGTTTTTGC AGGCGTGCTT ACGGTGGTGG GCTACCTTAT TTTAGAATTA
TGGGTCAATC GCTTAACCGC TTTGTTAACG TTAGCCAGTT TAGTGGGGTA CGCATTTATT
TATACTATGT ATTTAAAACG CGCTACGCCT CAGAATATTG TTATTGGCGG GTTAGCTGGT
GCAGCGCCGC CATTACTCGG TTGGACGGCG GTAACGAATG ATATCCATGC ACATGCATTA
CTCTTAGTGC TCATCATATT CATTTGGACC CCCCCACATT TCTGGGCGTT GGCCATTCAC
CGTGAAAAAG ACTACGCTCG GGCTAAAATC CCGATGCTGC CATGCACGCA CGGGATCGAA
TTTACTAAAA CATCCATTTT ACTGTACACG GTGCTATTAG CGCTCATTAG CGTGTTACCT
TATCTGATTG GCATGACAGG CGCGATATAT TTGCTAGGCT CCAGCGCATT AAATGCTGGC
TTCTTGTATT ATGCATGGAA ATTAAAATTC GCCAGTGACG AACACACCGC TATGAAAACG
TTTAAGTTTT CGATTATCCA TTTAATGGTA CTGTTTGTGG TCTTACTGGT TGACCATTAT
ATGAGATTTA CTTTTTGA
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| Protein sequence | MSKSVGVAPH NIVNKSGLHW RDYYEMTKPK VVMLLLLTAL VGMCLASETW ISWKILLAGL
TGIGFLSSAA AVINHVVDRK IDAQMARTSN RPMPKGKVSP QRALVFAGVL TVVGYLILEL
WVNRLTALLT LASLVGYAFI YTMYLKRATP QNIVIGGLAG AAPPLLGWTA VTNDIHAHAL
LLVLIIFIWT PPHFWALAIH REKDYARAKI PMLPCTHGIE FTKTSILLYT VLLALISVLP
YLIGMTGAIY LLGSSALNAG FLYYAWKLKF ASDEHTAMKT FKFSIIHLMV LFVVLLVDHY
MRFTF
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