Gene Patl_4237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4237 
Symbol 
ID4176027 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp5101245 
End bp5101883 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content46% 
IMG OID638057274 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_663790 
Protein GI109900535 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCAGAT TAAATGTAGC GTTGATCGCC TTAGTGGCAT TGGTTGTCGG TGTTGTGATC 
GCAGTGACTA TAGCGCCCCC GAAGAGTGAT GAAACGCAGT ATATTAAGCT TTACCCGCAG
GCGAGAGCCT TGCCTGATTT TTCTTTGACT GACAGTAAAG GCCAACCACT AACCAATAAA
AACTTGCAAA ATCAATGGAC GCTCGTTTTC GTTGGCTACA CTTTTTGCCC TGATATTTGT
CCCACAACGC TGGCTGACTT AAGCAGCATT TATCCTGAGT TGCAACGCAT TAAAGGGCCT
TACCCGGTCA AGGTGGCGTT TATTTCGGTC GACCCAGCGC GAGATACAAC AGAAAGACTA
GCGGAATATA TCGATTTTTT TGAACCTGAC TTTATAGCCG CAACCGGCGA GCATGCTGAT
TTGTTTCCTT TCGTTCGCGC AATGGGCATG ATGTATTCGA CGTCACAAAG CACAGACGAC
GAAAACTACT TGGTGGATCA CAGTTCATCT GTGGTGGTGG TAAATCCGCA AGGTCATGTT
GTGGGTCGCT TTAAACCAGA GTTTGCCCCA GGCAAAGTTG CAGTGAGCGA CAGTAAACGG
ATTCTGCATG ACATGACTAT CTTAGCGACA ACCAAATAA
 
Protein sequence
MSRLNVALIA LVALVVGVVI AVTIAPPKSD ETQYIKLYPQ ARALPDFSLT DSKGQPLTNK 
NLQNQWTLVF VGYTFCPDIC PTTLADLSSI YPELQRIKGP YPVKVAFISV DPARDTTERL
AEYIDFFEPD FIAATGEHAD LFPFVRAMGM MYSTSQSTDD ENYLVDHSSS VVVVNPQGHV
VGRFKPEFAP GKVAVSDSKR ILHDMTILAT TK