| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4230 |
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| Symbol | |
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| ID | 4176020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5093046 |
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| End bp | 5093822 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638057267 |
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| Product | bioH protein |
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| Protein accession | YP_663783 |
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| Protein GI | 109900528 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
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| TIGRFAM ID | [TIGR01738] putative pimeloyl-BioC--CoA transferase BioH |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.763657 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCACACGA CTTTGAAAAC ACGTACGGTA GGCAGTGGTC CTAATTTCGT TCTACTTCAT
GGATGGGGAG TGAATAGCGG TGTTTGGCAG CCAATAGCCA AGCAGCTCGA GCAACATTTC
AGCGTTACTT ATGTTGATTT GCCAGGCTTT GGTGAGAACA ATCAAATAAT GCCTAAGCCG
TACGATTTAA AAAATCTGGC TGAGTGTGTA GCGAACGTGC TCCCTGAGAA CAGTGTGCTT
GCAGGCTGGT CGTTAGGTGG CTTGGTTGCT CAACATGTTG CATTACTTGA GCCTACGAAC
GTTAAACAGT TGATACTAAT AGCCACATCA CCCAAATTCC AAAAAGGTAA TGATTGGGCG
GGGATTGATC CGAATATTCT GCAAGCGTTT TCGCAGCAAC TAGTGAAAAA CCTGAGCAAA
ACCATAGAGC GCTTTTTGGC AATACAGGCC ATGGGCAGTG ATTCAGCGAA AACAGATATT
AGAAAGATAA AAAACAGTAT AGAAGCGTCG CCCCAGGCGG ATATTGCCGC ACTGACAGCG
GGGTTAGATA TTTTAGAGCA TGTTGATTTA AGAGACCAAA TAGCGGCTTT GAAAATGCCG
ATACATTGGA TGTTGGGGCG CCTTGATAGC TTAGTGCCTG TAAAGCTTCA AGGATATGTA
CAGCGAAGCT TAGCTAAAAA TCACAGTGTT ACGATTTTCC CCCATGCTTC ACATGCGCCA
TTTATATCGC ACACAGAGGA TTTCCTGATT GATCTGATGG AAAACACCCT CAGGTGA
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| Protein sequence | MHTTLKTRTV GSGPNFVLLH GWGVNSGVWQ PIAKQLEQHF SVTYVDLPGF GENNQIMPKP
YDLKNLAECV ANVLPENSVL AGWSLGGLVA QHVALLEPTN VKQLILIATS PKFQKGNDWA
GIDPNILQAF SQQLVKNLSK TIERFLAIQA MGSDSAKTDI RKIKNSIEAS PQADIAALTA
GLDILEHVDL RDQIAALKMP IHWMLGRLDS LVPVKLQGYV QRSLAKNHSV TIFPHASHAP
FISHTEDFLI DLMENTLR
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