| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4226 |
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| Symbol | |
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| ID | 4176016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5088632 |
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| End bp | 5090959 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057263 |
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| Product | RNA binding S1 |
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| Protein accession | YP_663779 |
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| Protein GI | 109900524 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATTG AAAAAATCGC GAGTGAACTT CAGGTAAAAC CCACTCAAGT ACAAGCTGCC
GTCACCTTGT TAGATGAAGG CTCGAGTGTC CCTTTTATTG CTCGCTATCG TAAAGAGGCC
ACAAATGGCT TAGATGACAT TCAACTCCGT CAGCTTGAGC AGCGTTTGAT TTACCTGCGC
GATATTAATG ACAGACGTAA CGTGATCCTC AAAACGATTG ATGAGCAAGG CAAGCTTACA
GACCAACTTA AGCGCAGTAT TTTAAGCTGC GACAACAAGA CCGAATTAGA AGATTTATAC
CTGCCTTACA AACCTAAGCG TCGCACTAAG GGGCAAATAG CCATCGAAGC AGGCTTACAG
CCTCTTGCAG ACACTTTATT TGCCGACCCG ACCTTATCGC CTGAGTCTGA AGCCGCAAAG
TTCATTGCTG CAGATAAGGG CGTAGCTGAC GAAAAGGCAG CGTTAGAGGG GGCAAAATTC
ATCTTGATGG AGAAATTTGC TGAAGATGCA GCATTGCTAC AAAAAGTGCG CCAGTACTTA
ATGGAAAACG CTCATATCAA AAGCAGTGTG GTTAAAGGTA AAGAAAAAGA AGCGGCTAAA
TATTCAGATT ACTTTGCGCA CAGTGAACGC CTCAGTAAAA TACCATCGCA CCGCTGCCTA
GCCTTGTTTC GCGGCCGAAA TGAGAACTTT CTGCAAGTAT CAATGGATGC TGATCCGCAA
AAAGAAGAAT CAGACAAAAG CTCATTCGGT GAACACATCA TTGCCCAGCA TCTGGGTTTG
AATTTTAGTA ACCGTGCGGC GGATGCGTGG TTAGCGAGTG TCGTTCAGTG GACATGGAAA
GTAAAAATTG CTCTTCACAT GGAAACAGAA TTGTTTGGTG TGATAAAAGA AAAAGCCGAA
CAAGAAGCAA TTCAGGTGTT TGCTAAAAAT TTAAATGACT TGTTGATGGC GGCGCCTGCT
GGGGCGAAAA CCACCATGGG TCTTGATCCC GGTTTACGTA CCGGCGTAAA AGTGGCAATC
GTTGATGCCA CAGGTAAAGT GCTAGCCACC AGCACCATAT TCCCCCATGT GCCGCAAAAT
TTGTGGGACA AAAGCCTGCG AACGCTAGGT ATGCTGTGTA AGCAACACAA GGTGAAGTTA
ATCAGCATTG GTAACGGCAC AGGTTCACGT GAAACAGACA AGCTCGCCGC AGAGGTTATT
AAAGCTAACC CCGAACTGGG TTTGAGCAAA ATTATGGTCA GTGAAGCAGG CGCATCGGTT
TATTCGGCCT CTGAGCTGGC ATCAAATGAA CTACCCGATA TGGATGTGTC GCTTCGCGGC
GCTGTATCCA TCGCTAGGCG CTTACAAGAT CCACTCGCAG AGCTGGTTAA AATTGAACCC
AAAGCTATCG GTGTTGGTCA GTACCAACAT GACGTAAGCC AAAGTAACTT GGGGCGCTCA
CTTGACCGTG TTATTGAAGA TTGTGTAAAC GCCGTTGGCG TGGATTTAAA CATGGCTTCG
GCCGCGCTAT TAAGTCATGT ATCAGGCTTA AACCGCACAC TTGCCACCAA CATCGTAAAT
TTCAGAGATA CCAATGGCGC GTTTAGCAGT CGCAAAGACT TGTTAAAAGT AGAACGCTTA
GGGCCAAAAG CCTACGAGCA AGCCGCTGGC TTTTTACGCA TAGTAAATGG CACTAACCCG
CTTGATGCCT CGGCAGTTCA CCCTGAAGCT TACCCTGTGG TCCAAGCCAT AGTGAGTAAC
TCAGGCAGTG CTGTTAATGA TTTAATTGGT AACACTGAGC TATTGAAAAA GCTTGAGCCG
CAGCAATTTG TGGATGATTC ATTCGGGTTG CCCACAGTGA CTGATATCAT CAGTGAGCTA
CTTAAGCCAG GCCGAGACCC TCGTCCTGAA TTCAAAACCG CCACCTTTAA AGAGGGCGTG
TCGTCGCTTA ACGATTTAAA AGAAGGCATG ATTTTAGAGG GCGTAGTGAG CAACGTCGCT
AATTTTGGCG CGTTCGTTGA TGTAGGTGTC CACCAAGACG GTTTAGTGCA TATCTCGGCT
ATGACTGACA AATACATTTC TGACCCACGG GAAATCGTCA AAACCGGTGA CATTGTTAAG
GTCAAGGTAA TGGAAGTAGA TGTGGCGCGT AAGCGTGTGT CATTCACCAT GCGCTTGAAT
GACGATATCA GCGCCAAGCC GAATCAAAGC CGCGGCAACA GTGACAATAA ACCTCGTCAA
GGCAACAGGC CAAGTGGTAA GACTCAAAAT AAGAAACCCG CACCTGCTTC TGCTAATCAA
GCGATGGGCA ATGCCTTTGC CGATGCCTTT GCCAAAGCGA AAAAATAG
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| Protein sequence | MIIEKIASEL QVKPTQVQAA VTLLDEGSSV PFIARYRKEA TNGLDDIQLR QLEQRLIYLR
DINDRRNVIL KTIDEQGKLT DQLKRSILSC DNKTELEDLY LPYKPKRRTK GQIAIEAGLQ
PLADTLFADP TLSPESEAAK FIAADKGVAD EKAALEGAKF ILMEKFAEDA ALLQKVRQYL
MENAHIKSSV VKGKEKEAAK YSDYFAHSER LSKIPSHRCL ALFRGRNENF LQVSMDADPQ
KEESDKSSFG EHIIAQHLGL NFSNRAADAW LASVVQWTWK VKIALHMETE LFGVIKEKAE
QEAIQVFAKN LNDLLMAAPA GAKTTMGLDP GLRTGVKVAI VDATGKVLAT STIFPHVPQN
LWDKSLRTLG MLCKQHKVKL ISIGNGTGSR ETDKLAAEVI KANPELGLSK IMVSEAGASV
YSASELASNE LPDMDVSLRG AVSIARRLQD PLAELVKIEP KAIGVGQYQH DVSQSNLGRS
LDRVIEDCVN AVGVDLNMAS AALLSHVSGL NRTLATNIVN FRDTNGAFSS RKDLLKVERL
GPKAYEQAAG FLRIVNGTNP LDASAVHPEA YPVVQAIVSN SGSAVNDLIG NTELLKKLEP
QQFVDDSFGL PTVTDIISEL LKPGRDPRPE FKTATFKEGV SSLNDLKEGM ILEGVVSNVA
NFGAFVDVGV HQDGLVHISA MTDKYISDPR EIVKTGDIVK VKVMEVDVAR KRVSFTMRLN
DDISAKPNQS RGNSDNKPRQ GNRPSGKTQN KKPAPASANQ AMGNAFADAF AKAKK
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