Gene Patl_4224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4224 
Symbol 
ID4176013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp5086259 
End bp5086750 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content51% 
IMG OID638057260 
Productphosphoribosylaminoimidazole carboxylase, catalytic subunit 
Protein accessionYP_663777 
Protein GI109900522 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 
TIGRFAM ID[TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.349696 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTCAAG TTGCGATTGT TATGGGTTCA AAGTCTGATT GGCCCACCAT GGCCCAAGCG 
GCAAAAATGT TAGATGCCTT AGGCGTAAGT TATCACGCCC AAGTGGTGTC GGCTCATCGC 
ACCCCTGCCC TGTTAACAGA ATTTTCAGAA ACGGCAGCCG ACAAAGGTTA CCAAGTGATT 
ATTGGTGGCG CTGGCGGCGC TGCGCACTTA CCTGGCATGA TAGCCGCGCA TACTCACCTG 
CCGGTATTTG GTGTGCCCGT GCGTTCAAGC CAGCTAAGTG GAGTAGATTC TTTGTACTCA 
ATTGTACAAA TGCCCAAAGG CGTTGCTGTA GGTACCTTAG CTATAGGTGA AGCTGGCGCA 
GCTAACGCCG GCTTACTTGC CGCGCAAGTT GTTGCTTTGC ATGATGAAAC CGTACGCGAT 
GCGATTATTC AATTCAGACA AAAACAAACG GCTGACGTAT TAGCCCAACC CGCACTGGAA 
CTACCTGAAT GA
 
Protein sequence
MPQVAIVMGS KSDWPTMAQA AKMLDALGVS YHAQVVSAHR TPALLTEFSE TAADKGYQVI 
IGGAGGAAHL PGMIAAHTHL PVFGVPVRSS QLSGVDSLYS IVQMPKGVAV GTLAIGEAGA 
ANAGLLAAQV VALHDETVRD AIIQFRQKQT ADVLAQPALE LPE