| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4223 |
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| Symbol | rho |
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| ID | 4176012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5084682 |
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| End bp | 5085983 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638057259 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_663776 |
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| Protein GI | 109900521 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0343455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAC TTTCAAGCAT GAAAAGACCC ACCAATATGA ACCTAACGGA ACTCAAGAAC
AAACCCATCA GTGAGCTGGT TGGACTGGCC GAAAAAATGG GCCTAGAAAA CATGGCTCGC
GCTCGTAAGC AAGACATTAT ATTTTCAATT TTGAAAACCC ACGCCAAAAG TGGTGAAGAT
ATTTTCGGCG ACGGCGTCCT AGAAATACTT CAAGACGGCT TTGGTTTCTT GCGTTCTAAC
GACGCATCAT ACTTGGCGGG ACCAGATGAT ATCTACGTAT CACCTAGTCA GATACGTCGC
TTTAACTTGC GCACCGGCGA TACCATTTCA GGTAAAATTC GCCCCCCCAA AGACAGCGAG
CGATACTTTG CCCTGTTGAA GATCAGCGAA GTTAACTTTG ACCGCCCTGA AAACGCCCGT
AACAAAATCT TATTCGAAAA CTTAACGCCA CTGCATGCCA ATGAGCGTTT AGTCATGGAG
CGAGGCAACG GCAGTACCGA AGATATTACT GCTCGCGTAC TTGATTTAGC CTCTCCAATC
GGCCGTGGTC AACGTGGTCT TATCGTTGCA CCGCCTAAAG CCGGTAAAAC GCTTTTACTA
CAGAACATCG CCCAATCAAT TGCAGCAAAT CATCCAGAAT GTTTGCTCAT GGTATTGTTG
ATTGATGAGC GCCCAGAAGA AGTGACTGAG ATGCAACGCC TTGTACAAGG TGAAGTGGTT
GCTTCTACCT TTGATGAGCC TGCGAGTCGT CACGTACAAG TGGCTGAAAT GGTAATTGAA
AAAGCCAAAC GTCTAGTCGA ACACAAGAAA GATGTGGTTA TCTTACTTGA TTCAATCACA
CGTTTAGCCC GAGCGTACAA CACCGTAATC CCATCATCCG GTAAAGTACT TACTGGTGGT
GTTGATGCTA ACGCATTACA CAAGCCTAAG CGTTTCTTTG GTGCTGCGCG TAACATCGAA
GAAGGCGGCA GCTTAACCAT TATTGCTACT GCGCTTATCG ATACTGGCTC TAAAATGGAT
GAAGTTATCT ACGAAGAGTT TAAAGGTACG GGTAACATGG AATTACACCT GAACCGCAAA
ATTGCGGAAA AGCGTGTTTT CCCAGCGATT GACTACAATC GCTCTGGTAC TCGCCGCGAA
GAATTACTGA CCACCCCAGA CGAATTACAA AAGATGTGGA TCTTACGTAA AATCGTGCAT
GAAATGTCAG AAATTGACGC AATTGAATTT TTAATTGGTA AGTTGTCTAT GACCAAAACC
AATAATGAAT TCTTCACTGC GATGCGCAAG CAAAAAAGCT AG
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| Protein sequence | MAKLSSMKRP TNMNLTELKN KPISELVGLA EKMGLENMAR ARKQDIIFSI LKTHAKSGED
IFGDGVLEIL QDGFGFLRSN DASYLAGPDD IYVSPSQIRR FNLRTGDTIS GKIRPPKDSE
RYFALLKISE VNFDRPENAR NKILFENLTP LHANERLVME RGNGSTEDIT ARVLDLASPI
GRGQRGLIVA PPKAGKTLLL QNIAQSIAAN HPECLLMVLL IDERPEEVTE MQRLVQGEVV
ASTFDEPASR HVQVAEMVIE KAKRLVEHKK DVVILLDSIT RLARAYNTVI PSSGKVLTGG
VDANALHKPK RFFGAARNIE EGGSLTIIAT ALIDTGSKMD EVIYEEFKGT GNMELHLNRK
IAEKRVFPAI DYNRSGTRRE ELLTTPDELQ KMWILRKIVH EMSEIDAIEF LIGKLSMTKT
NNEFFTAMRK QKS
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