Gene Patl_4207 details

Gene Information

• Locus tag: Patl_4207
• ID: 4175996
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 5068212
• End bp: 5070254
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638057243
• Product: oligopeptidase A
• Protein accession: YP_663760
• Protein GI: 109900505
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0339] Zn-dependent oligopeptidases

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCTAA GCCCGTTGCA AGATTTGTCT GGATTACCAC GTTTTTCAGA AATTAGTCCC 
GAGCAAATTC AGCCCGCTGT TAAGCAAGCG ATTGAAGATG CTAAACAAAC CATAGAAACC 
TTGCTTGCCC AGCCAACTTA CACATGGGAC AACTTCGCCG CTAAATTAGA AGACAAAGAC 
GATGAACTTG GTCGCATGTG GTCACCGGTT TCACACATGA ATTCAGTGGT CAGCAAGGAC 
GAACTGCGTG AAGCGCACGA CGCTTGCTTA CCCTTGTTAT CTGAATATGG CACTTGGGTT 
GGTCAGCATA AGGGCTTATA CCAAGCCTAC CTGCATATTC AAAATAGTGC GGAGTTCGCT 
GAACTGGATG AGGCAAAACG TAAAGTCATT GAGAACACAG TGCGTGATTT CGAGTTATCG 
GGCGTCGGCT TAGATGACGA GAAAAAACAG CGTTACGGCG AGATAAAAAG CCGCTTGTCA 
GATTTATCCT CAACGTTTAG CAACAACGTG ATGGACGCTA CGCTAGGCTG GCAAAAACAC 
ATCACCGATG AAACTGAGTT GGCCGGTTTA CCCGAGTCCG CCTTGTCCGC TGCCAAACAA 
CTTGCTGAAA GCAAAGAGTT GGATGGCTGG TTGTTCACCC TTGATATCCC TAGCTATTTA 
CCTGTGATGA TGCATGCCGA TAACCACCTA TTGCGCGAAG AAATGTACCG CGCATTTACG 
ACACGCGCGT CTGACCAAGG GCCAAATGCA GGCCAATGGG ATAACGGCCC ACTCATCGAT 
GAAACCATGG CATTGCGCCA AGAGCTCGCC AACTTATTAG ATTTCTCCAA TTACGCAGAA 
CGCTCTTTGG CCACGAAAAT GGCAGAATCG ACCAGTCAGG TAAAAGGCTT TTTGCAAGAC 
TTAGCGCAGC GCTCACGACC ACAAGCCCAA CAAGACTTAA CCGAACTGGC AGAATTCGCC 
AAAACCCAAT ATGACAAGCC TGAGCTACAA GCGTGGGATT TGGCTTATTA CAGCGAAAAA 
CTCAAAGAGC AAAAATACGC CATTTCAGAT GAAGCCCTGC GTCCGTATTT CCCTGCCCAT 
AAAGCAGTGG ATGGCTTATT TGAAGTGGTA TCACGTTTAT ACGGTCTACA AATTAGCGAA 
CGTGATGGTG TAGACACTTG GCACGAAGAT GTGCGCTTCT TTGATATCAA AGACGCAAAA 
GGTGATTTAC GCGGCAGCTT TTACTTAGAC CTGTACGCTC GCGAACACAA ACGTGGCGGA 
GCCTGGATGG ACGAGTGCCA AACGCGTCGC GCCAAACCTG ATGGCACAAT GCAACTGCCG 
GTGGCTTATT TAACGTGTAA CTTCAGTGGC CCAGTAGGCA ACAAGCCTGC GTTATTCACT 
CACGATGAAG TGATTACCTT ATTCCATGAG TTTGGCCACG GCATTCATCA CATGTTGACC 
CAAATCGACG TTGCTGGCGT ATCAGGCATC AACGGTGTGG CATGGGATGC GGTTGAGTTA 
CCCAGCCAGT TTTTAGAAAA CTGGTGCTGG CAGCCTGAAG CATTGGCGTT TATCTCAAGC 
CACTATGAAA CGGGCGAGCC ACTCCCCCAA GACTTGTTGG ATAAAATGCT AGCGGCACGT 
AACTTCCAGT CAGCCATGCA GATGGTGCGT CAATTGGAAT TTAGCTTATT TGATTTCAGC 
TTACACGAGC AATATAACAG TGAGCAGAAA ACCTCAGTGC AAGGCTTGTT AGATGACGTA 
CGTAGCAAAG TAGCTGTGGT TATTCCACCT GAGTTTAACC GCTTCCAGAA TAGTTTTGGG 
CATATTTTTG CTGGTGGTTA TGCAGCAGGT TATTACAGCT ATAAATGGGC TGAGGTGTTG 
TCATCAGACG CATTTAGTCG ATTTGAAGAG GAAGGCATAT TTAACCAGCA GGTAGGTCAA 
GATTTCTTGA ACAACATTCT TGAAAAGGGT GGTAGTAAAG AGCCCATGGA ATTGTTTGTT 
GCGTTTAGAG GCCGTGAGCC GAAAGTTGAT GCATTATTGC GCCACAGCGG TATTGAAGGG 
TAA 

 

Protein sequence

MSLSPLQDLS GLPRFSEISP EQIQPAVKQA IEDAKQTIET LLAQPTYTWD NFAAKLEDKD 
DELGRMWSPV SHMNSVVSKD ELREAHDACL PLLSEYGTWV GQHKGLYQAY LHIQNSAEFA 
ELDEAKRKVI ENTVRDFELS GVGLDDEKKQ RYGEIKSRLS DLSSTFSNNV MDATLGWQKH 
ITDETELAGL PESALSAAKQ LAESKELDGW LFTLDIPSYL PVMMHADNHL LREEMYRAFT 
TRASDQGPNA GQWDNGPLID ETMALRQELA NLLDFSNYAE RSLATKMAES TSQVKGFLQD 
LAQRSRPQAQ QDLTELAEFA KTQYDKPELQ AWDLAYYSEK LKEQKYAISD EALRPYFPAH 
KAVDGLFEVV SRLYGLQISE RDGVDTWHED VRFFDIKDAK GDLRGSFYLD LYAREHKRGG 
AWMDECQTRR AKPDGTMQLP VAYLTCNFSG PVGNKPALFT HDEVITLFHE FGHGIHHMLT 
QIDVAGVSGI NGVAWDAVEL PSQFLENWCW QPEALAFISS HYETGEPLPQ DLLDKMLAAR 
NFQSAMQMVR QLEFSLFDFS LHEQYNSEQK TSVQGLLDDV RSKVAVVIPP EFNRFQNSFG 
HIFAGGYAAG YYSYKWAEVL SSDAFSRFEE EGIFNQQVGQ DFLNNILEKG GSKEPMELFV 
AFRGREPKVD ALLRHSGIEG