Gene Patl_4203 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4203 
SymbolsecD 
ID4175992 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp5062544 
End bp5064370 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content47% 
IMG OID638057239 
Productpreprotein translocase subunit SecD 
Protein accessionYP_663756 
Protein GI109900501 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAAAAA CAACAGCAAA GCCCAAGTAC ACTTGGCAAA TTTTGGTGAT TATCGTCACC 
GTTATCATTT TAGGCTTAAA TGCCATTCCG ACGTTTTATG GCAATCACAA TGCCTTACTC
GTCAGTGCAG TTAACCCAAC ACAGTCATTG CCCAATACGC AAACGTTACG CAAGGCAGTA
CAACAGCAGA ACATCAACGT AGAGCAAATC ATCAATAGTG AATCGAGTAG TAAAATCGTT
ATTGACGGAG ACGACGAAGC TTTACTCGTA GCGCAAAGCC AACTTAAAAC GACCTTAGGC
GACGACTTTC AAGTACGCTT AGGCAGCCAG TCAGCCGCAC CAAAATGGTT ACAAGGCATG
GGAATGTCCC CCATCAAGCT TGGCTTAGAT TTAAGCGGCG GCGTGTTATT TGTGCTTGAG
GTCGATACTC ATAAAGCCGA CCAAGAACGT TTAGGCAACG CAAAGGACGA AGCGCTGCAG
CTTATCCATG ATAAAGGTTT GCGTGGTATG AGCGTGAAGC TAGCCGACTC ACAAGAGAAG
ATTAACCTTC ACTTTCTCAC TCACCAAGCA AGCCAAGTCA AAAAGGTGGT CAATGAGTTA
CAACAGCAAC TACCCGGCAT AACCTATACC GCAAGCGGCG ATCGCGATGC CGCGCTGGTA
TTTTCAGATC AAAGTGTCAC TACCTTTCAT CATGAAATTA TGGCCCAAGC TCTGACCACC
CTGCGCGGGC GTATTGAAGA GCTTGGCATC ACAGAAGCCG TTACCCAGCG CCAAGGTCAA
AACAGAATAC GTATTGAGTT ACCAGGGGTG AAAGATCCAG AGCAAGCCAA GCGTATTATC
GGTGCCACCG CATCGCTGGA TTTCTACGAA ATGGCCCAAA GCGGCACAGT GGGAGCCAAA
ACCTTTACTG ATGAAAATGG TCGTCGTCTG CGCTTGGCAC CTAAACCCAT TTTCACTGGC
TCAAATATCG AAAATGCGAC CTCAGGGCGT GATGAGATGG GTATTGCACT AGTAAACCTA
GCGCTTGACG GCATCGGTGG TAAGAAGATG TCTGACTTCT CTAAAGACAA TATTGGCAAT
CCTATGGTCA CAATATTCTC TGAATACCAT AAAAACAGCG CAGATGAGAT GGTCAAAAGC
AGCAAGGTCA TTAGTGTAGC AACCATTCAA AGTCAGTTAG GCAACCGCTT TAGCATCACC
AATTTAGATA GCCCACAAGC GGCTTCCGAT CTCGCTTTAT TATTGCGTGC AGGCTCACTA
GATGCACCTA TCACCATAGT GCAGCAACGC ACCATTCAAG CGTCGTTAGG ACAAGAAAAC
GTCGGTAATG GCATCATGGC ACTCGCTATA GGCTTGGGTT TTACGTTGGT CTTTATGGGC
TTGTGGTACC GCAAATTAGG GCTTATCGCC AATACCAGCT TGATTCTTAA CTTAGTATGT
TTATTAGGCT TAATGGCGCT ATTGCCCAAT GTTGTACTGA CCCTACCCGG CATCGCTGGT
TTGGTGCTCA CCGTGGGCAT GGCGGTCGAT ACTAACGTGT TGATCTTTGA GCGTATAAAA
GAAGAGCGAA AACGCGGGCG GAGTAACTTT TTGGCGATTG AAACGGGCTA CAAAGAAGCC
TTCGCCACTA TTTTAGACGC CAACGTCACC ACCATGATCA CCGCCCTCAT ACTGTTGAGT
ATCGGTTATG GGCCAGTCAA AGGATTTGCG ATGACCTTAA GTTTGGGCAT TTTAACCAGT
ATGTTTACCG GCGTATTCGT TGCTCATGTA TTGACGTCAT TGGTTAAACC GCAAATAGCC
ATCAAACAAA AGGAGCTAAG ATCATGA
 
Protein sequence
MRKTTAKPKY TWQILVIIVT VIILGLNAIP TFYGNHNALL VSAVNPTQSL PNTQTLRKAV 
QQQNINVEQI INSESSSKIV IDGDDEALLV AQSQLKTTLG DDFQVRLGSQ SAAPKWLQGM
GMSPIKLGLD LSGGVLFVLE VDTHKADQER LGNAKDEALQ LIHDKGLRGM SVKLADSQEK
INLHFLTHQA SQVKKVVNEL QQQLPGITYT ASGDRDAALV FSDQSVTTFH HEIMAQALTT
LRGRIEELGI TEAVTQRQGQ NRIRIELPGV KDPEQAKRII GATASLDFYE MAQSGTVGAK
TFTDENGRRL RLAPKPIFTG SNIENATSGR DEMGIALVNL ALDGIGGKKM SDFSKDNIGN
PMVTIFSEYH KNSADEMVKS SKVISVATIQ SQLGNRFSIT NLDSPQAASD LALLLRAGSL
DAPITIVQQR TIQASLGQEN VGNGIMALAI GLGFTLVFMG LWYRKLGLIA NTSLILNLVC
LLGLMALLPN VVLTLPGIAG LVLTVGMAVD TNVLIFERIK EERKRGRSNF LAIETGYKEA
FATILDANVT TMITALILLS IGYGPVKGFA MTLSLGILTS MFTGVFVAHV LTSLVKPQIA
IKQKELRS