| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4198 |
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| Symbol | |
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| ID | 4175987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5055940 |
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| End bp | 5056827 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638057234 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_663751 |
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| Protein GI | 109900496 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.408644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATCAGT TAAATTACCA GCACTTATAT TACTTTTACG TCACGGCGAC CGAAGGCAGC
ATCATAAAAG CAGCCAGCGT TCTGCACCTC ACACCACAAA CCATCAGCGA ACAAATTCGT
ACCCTTGAGG CATACTTCGG TTTTGACTTG TTTGACAGAG TGGGTAAACG CTTACAGCTC
AATAGCCAAG GTCAACTCAC CTACAATTTT GCTAAAAACA TTTTTAGTAT GGGTAACGAG
TTACTGCTTT CAGTGAGACA CCAACAGCAA AACCAACAAC ACGTGTTGTC CATAGGGGTG
ACCGATGTGT TGCCTAAAAT TCTTGCATTC GAAATGTTTC AACGCAGCTT AACAGTCCAT
CCGAATGTGC GCCTGGTATG TAAAGAAGGG GATCTAAATA GCCTTACCGC AGAGCTGGCA
CTGAGTAAAA TTGATGGTAT TTTATCTGAC CAACCATTAC TCAATACCAG CAATGTTAAA
GCTTATAATC ACTTGCTTGC TCGCAGTGGA TTAAGCTTTT TTGTTGCTCA GGACCTAGCA
GAGAAGTTCG TTGACTTCCC ACAGTGTCTA GATAACCAAC CCTTCTTATT ACCCGGCGAT
AAATCAGCCC AAAAGCTATC GATACTTGCT TGGTTTGCCA AACACAATAT CAATCCACAG
ATTGCAGCTG AATTTGACGA CTGCGCACTA ATGAAACTAT TTGCTCAACG CGGCTACGGG
GTATTTTGTG CACCAACTTC CGTAGAGCAT CATATAGAAA AACAATACAA GGTACGGGTG
ATTGGTCGCA CTGATATGAT CACGGAACAT TTGTATCTGA TTTCCCCGGA GCGAAAAGTC
ACCAACCCTC TATTATCACC GTTAGTCATT AAAGGCGCGG CTCGTTAA
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| Protein sequence | MNQLNYQHLY YFYVTATEGS IIKAASVLHL TPQTISEQIR TLEAYFGFDL FDRVGKRLQL
NSQGQLTYNF AKNIFSMGNE LLLSVRHQQQ NQQHVLSIGV TDVLPKILAF EMFQRSLTVH
PNVRLVCKEG DLNSLTAELA LSKIDGILSD QPLLNTSNVK AYNHLLARSG LSFFVAQDLA
EKFVDFPQCL DNQPFLLPGD KSAQKLSILA WFAKHNINPQ IAAEFDDCAL MKLFAQRGYG
VFCAPTSVEH HIEKQYKVRV IGRTDMITEH LYLISPERKV TNPLLSPLVI KGAAR
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