Gene Patl_4186 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4186 
Symbol 
ID4175975 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp5042438 
End bp5043025 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content46% 
IMG OID638057222 
ProductTetR family transcriptional regulator 
Protein accessionYP_663739 
Protein GI109900484 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAATATTG CGAAACGTAA AATACTTCAA GCCGCATCAG AATTGTTTTT AGAAGGTGGA 
ATTGCGGCCT TAAGCGTACG CTCAATAGCC AAGCACGCTG GAGTGTCGAC CATAGGCATT 
TACAGCCACT TTCAAGGCAA AGAAGGAATT TTGGATGAAC TGTACATCCA AGGTTTTGAG 
TTAGTGATGC AAGCTATGGA TTTCGAGCAA CATGACCTAT CGCCAAAAGA AGTCATGCGT 
CGAGGTATTC GTGGTTACTT CGCCATGGCT GAGGCTCACG AAGGTCATTA CCGATTGATT 
TTCGGCGAGA ATGACAGCCG CTATACTCCC TCAGAAGAAG CAAAGGCTGT GGCTGAAAAG 
GCGTTTGGCC AATTGCTAAA AGTGACAGCT CTTTTACTGC CCGATGATGC CAACATGGCC 
CTTAAACACA AAAACGCCTT AGAAATTTGG GCTTTTGTGC ATGGCTACGT CAGTTTAAAG 
CACCATGCTG TTGCCAGCAT TTTCGAAACA CCTGATTGGT ATGTCATGGC CGAAGATGCT 
TTATGCATGC ACATTGACGC GATCCTAGCC ACTCGCACTC ATCTATGA
 
Protein sequence
MNIAKRKILQ AASELFLEGG IAALSVRSIA KHAGVSTIGI YSHFQGKEGI LDELYIQGFE 
LVMQAMDFEQ HDLSPKEVMR RGIRGYFAMA EAHEGHYRLI FGENDSRYTP SEEAKAVAEK 
AFGQLLKVTA LLLPDDANMA LKHKNALEIW AFVHGYVSLK HHAVASIFET PDWYVMAEDA 
LCMHIDAILA TRTHL