| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4171 |
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| Symbol | |
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| ID | 4175960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5021331 |
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| End bp | 5022743 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057207 |
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| Product | NLP/P60 |
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| Protein accession | YP_663724 |
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| Protein GI | 109900469 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0079177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTA TTTTATCAAT CGGGCTGTTA CTGGCATGCG CTTTAAGTGC GACTGCATTG
CCTGCCAGTG CTCTACAGCA TCCTACCAAA GACCTGCAAA AGAACTGGGG AACTGATGTG
ATGAATGTAA CACAAGTTCA GTTGCACCCT GATCACTGGG TGCAGAAGCT AAAAAGTCCT
GAACAGCTAG TCATGACCCA AGAACAGATC AATGCGCATA ACCAAGGGTT AATTGAGCAT
AACCGTTTTG TTAGCGATCC CCTCAGTAGT CCAGATTCAC TTACTGACAA ACAACTCACA
GCGAAAATTC ACAGCATCAG CAAAGTGCCC AAAAGTGCGC GCTATTTTGT TGGTGGACGC
CAGTTAAGTG CTCAAGATTA TGAGCTTTAT CAAGACAATA TGACTTTTGC TTCAGCACCG
AATGGTCACA AAGTGGGATT TGGCTTAATG GTAAAGCGCG CAGCACTGCG TACCTTTCCA
ACCGATGATA GAGTGCTGAA CTCAGGGATG GATGTGGACC TTGACCGTTT TCAAGAAAGC
GCTTTGTTTC CAGGGGACGC AGTTGCGATC CTAACCTACA GCAAAGATAA GCAGTGGGCA
TTGGTGCAAG GGTTTAATTA CCTCGCTTGG ACAAGAGTCG AAAATTTTGC CCTTGGTACT
AAACAGCAAG TTGCTGAATT TAAAGATGAA AGCGATTTCG TTGTGATTAC CGGAGCCAAG
GTGTTCACTC AATACGTGCC TGACATGCCA GCAGTGTCTG AGCAACAACT GGACATGAGT
GTACGTTTGC CTTTAGTTAG CGAAAATGAA GTGCCAACCG CATTATACGC CCAAAACCCT
TATGCCAATT ACGTGGTTTG GTTACCCACT CGTACACCGC AAGGGAAGTT GAGCTTACAA
AAAGCCCTTA TCGGGCGAAG CCAAGACGTG CATTTGGGGT ACATGGCATA CACCAAAGCG
AACGTTATTC GTCAAGCCTT CAAGTTTTTA GGTGAACGTT ATGGTTGGGG GCATGATTAT
AACGGCCGTG ACTGCACAGG GTTTGTGGGA GAAATTTACC GCTCGTTCGG CATTTTAATG
CCACGCAACT CTGGTGATCA GGGTGGAACA GACTTCGGTA TTGATAACCG GTTTTCCAAG
CAATCTCCTA TGGCAGATAA ACTAGCGGCC ATTGAAGATT TAGAAATAGG TGACTTACTT
TATATTCCTG GCCACGTGAT GCTCTATTTA GGCGATGAAC AGGGCCAGCC GTTTGTGATC
CATGACGTAA AAGGCTTGGC GTATTTTGAT GAGCATAAAA AGCTCTACAA AGGCACCTTA
AACGGTGTGT CCGTCACGCC TTTGTTACCC CTTCGCTTGT CGGAGAAAAA CAGTTATGTG
GATCGTCTCT ATAACATTAA GCGTATACGG TAA
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| Protein sequence | MKRILSIGLL LACALSATAL PASALQHPTK DLQKNWGTDV MNVTQVQLHP DHWVQKLKSP
EQLVMTQEQI NAHNQGLIEH NRFVSDPLSS PDSLTDKQLT AKIHSISKVP KSARYFVGGR
QLSAQDYELY QDNMTFASAP NGHKVGFGLM VKRAALRTFP TDDRVLNSGM DVDLDRFQES
ALFPGDAVAI LTYSKDKQWA LVQGFNYLAW TRVENFALGT KQQVAEFKDE SDFVVITGAK
VFTQYVPDMP AVSEQQLDMS VRLPLVSENE VPTALYAQNP YANYVVWLPT RTPQGKLSLQ
KALIGRSQDV HLGYMAYTKA NVIRQAFKFL GERYGWGHDY NGRDCTGFVG EIYRSFGILM
PRNSGDQGGT DFGIDNRFSK QSPMADKLAA IEDLEIGDLL YIPGHVMLYL GDEQGQPFVI
HDVKGLAYFD EHKKLYKGTL NGVSVTPLLP LRLSEKNSYV DRLYNIKRIR
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