| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4170 |
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| Symbol | |
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| ID | 4175959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5019744 |
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| End bp | 5021324 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057206 |
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| Product | Na+/solute symporter |
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| Protein accession | YP_663723 |
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| Protein GI | 109900468 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0688566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCAC AGTATTCTGG TTTAGATTGG TTAGTTTTTG TTGCTTATGG CTTGTTGCTA
CTGGGCTCAG GTTGGTTTTT TAATCGCCGC TCAGCAAACA GCCAAGATTA CTTTCGTGGT
GGTAACACTA TGCCTGTATG GGCGGTGGCC ATATCTGTGC TCGCCACTTC GCAATCTGCA
GCCACTTTTT TAGGCGGCCC CGACCAGGGT TACCGCGGTG ATTTGTCTTA TTTAGCGACT
AACTTAGGCG CGTTTGTGGC GGCGTTCTTT GTTGCCACTT TTCTTATTCC TAAGTTTTAT
AAATTTAATG TGTACACCGT ATACGAACTG CTTGAAGTAC GCTTTGGCCC CACAGCGAAG
AAACAAGCAG GTTTGATGTA TTTATGTGGC CGTATATTCG CGAGCGGGGC TCGTTTGTAC
ATGGCAGCGA TTGCCGTATC GATGATTTTA TTTGCCGACA TTGAAGCATC ACATGTAGTG
GCTGCAACTT GTATTTTGAC AGTCGCAGGT CTGATGTACA CAGTGTATGG TGGCATCAAA
ACAGTGATAT ACAGTGATGT AATTCAGTGT TGCGTGTATG TGGGGGCAGC GGTAGCGGTT
ATTTATTGTT TGCTGGCGGC GATCCCCAGT GATATGTCCA GCATCATGGC GGTGCTTGCC
GAGCCAGGAG CTGGTCAAGC ATCGAAGCTG GCGTTATTCA AATTTGATTG GGATTTCAGC
CCCTCGGGCG TGTTTAACAT CTGGTCAGTG TTTACTGGTT TTGTGTTGCT AAATATCGCC
GCATTTGGTC TTGACCAAGA CATGACCCAG CGCGTGCTAA CGTGTAAAAA TGCCAAAGAA
GGCAGTAAAG CCATGCTGTA TTCCATTGTT ATGGTGATTC CGATCATGCT GCTTTTCATT
GTTATTGGCT TGTTGCTATA TGTTTATTAC CAGCGCCCAG ATTTAATGCA TAGCGGTGCT
GCAGGCGAGG TTTTACCGAC CTTTGAAGGT GAGCCAGTCA CTATTTTCAT GTACTACGTA
CTCAATCATA TTCCTGCTGG CGTGAAAGCG TTAGTAACCG TTGGCATCAT TGCTGCAGCG
CTATCGACAC TTAATTCAGG GTTGAATTCT ATGGCGTCAG TGTTGGTGCA AGATATTTAC
GCACCTTGGC AAAAGAAGAA AGGTAATCGC CACAGTGACA TGCATTTTGT CAGCGCTGGG
CGCGTGGCTA TGGGGTTGGT GGCTGCAGCA CTAGGCGCTA TGGCCTGCTT ATGCTTTTAT
TGGCAACAAT ATACTGACAC ACCACTTTTA CAGTTTGCTT TGGGTGTCAT GGTGTTCTCG
TACAGTGGCT TATTAGGTGT GTATTTCACC GCCATCTTCA CTAAGCGCGG TAGCCCTCAA
AGCGTGTTAG CGGCGCTCAT TTGCGGTTTT ATGACGACGC TTTTATTTCA GCCTTATATT
ATGACGCTGT ACTTACCACA AGACTGGATA GTGCACATTG GATTTACTTG GCAACTTTGT
ATCGCCACAT TGGTCGCAAG CCTAGTGTGT TTATCAGGCA AAGGCAGCAG CGAATCGCAA
TTTCAGGGAC AGGAAGCATG A
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| Protein sequence | MSAQYSGLDW LVFVAYGLLL LGSGWFFNRR SANSQDYFRG GNTMPVWAVA ISVLATSQSA
ATFLGGPDQG YRGDLSYLAT NLGAFVAAFF VATFLIPKFY KFNVYTVYEL LEVRFGPTAK
KQAGLMYLCG RIFASGARLY MAAIAVSMIL FADIEASHVV AATCILTVAG LMYTVYGGIK
TVIYSDVIQC CVYVGAAVAV IYCLLAAIPS DMSSIMAVLA EPGAGQASKL ALFKFDWDFS
PSGVFNIWSV FTGFVLLNIA AFGLDQDMTQ RVLTCKNAKE GSKAMLYSIV MVIPIMLLFI
VIGLLLYVYY QRPDLMHSGA AGEVLPTFEG EPVTIFMYYV LNHIPAGVKA LVTVGIIAAA
LSTLNSGLNS MASVLVQDIY APWQKKKGNR HSDMHFVSAG RVAMGLVAAA LGAMACLCFY
WQQYTDTPLL QFALGVMVFS YSGLLGVYFT AIFTKRGSPQ SVLAALICGF MTTLLFQPYI
MTLYLPQDWI VHIGFTWQLC IATLVASLVC LSGKGSSESQ FQGQEA
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