| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4165 |
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| Symbol | |
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| ID | 4175954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5013050 |
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| End bp | 5015893 |
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| Gene Length | 2844 bp |
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| Protein Length | 947 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057201 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663718 |
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| Protein GI | 109900463 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00322624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATAAAA TTACTCAAGC CGTAAAGCTA GCGCTTTTAG GCGGCTCAAT AGTTATGACA
AACAGCGCGT TGGCACAACA GAGCGACGAT GCAGCGAACT CAGTAGAAAA AATCCAAATC
ACAGGCTCTC GTATTCTTCG TGAAGGCGCT ATCGCACCTT CACCTGTGAC AGTACTTAGC
GGCGAAAGTT TGCTAAATAC TGGTGCGATG AATATCGGTG AAGCACTAAA TGAGCTACCC
GCATTAGCAA GTACTTACTC TTTATCAAAC TCAGGTCAAT TCATCGGTAC CGCCGGTTTG
AGCCTTCTTG ATTTGCGCGG AATGGGCACT GAACGCACCC TGGTATTGGT CAATGGCAAG
CGCCACGTAG CGAGCAGTGC AGGTACCTCT TCGGTTGATA CCAACACCAT TCCTACCAGC
TGGATTGAGC GCGTTGAAAT CATCACAGGC GGTGCATCAG CGGTTTACGG TGCAGATGCG
GTAACGGGTG TGGTTAACTT TATTCTTAAA GACAAGATTG AAGGCTTACA AGTTAGCGCG
ACCAAAGGCT ATGCTGACAA CCACGATTAC AGCAACGACA AGTATTCATT CTCTTACGGC
ACCAACTTCA ATGATGATCG CGGTAATATC GCCTTCTCAG TGGAGCACAG CAGCCAAGAA
AGCTTGAACG CCCTGGATAA CCCATGGACA TCTACTTCTT TCCGCAATCT AGCTAACACC
GCGCAAAATG ATGACAATAG AGATTCTTTA GATGTCCCTG ACGATATCTA CACACCTAAT
GCGGGTATCT ATGCGTTAAG CAATGCTGGT ACCTTTGCCA TTGGCGATGA TTACTATTCA
TTTAACCCTA ATGGTTCAGT ACGCGACGTA TACCTAGGTG ATAACGTAGA CGGCATAGCA
TGTGAAAACT GTGATTTTAT TAATTTGAAT CAGTTCAGCG AGCTTCAGCC TGAGTTTGAC
CGCACCAACT ATAACCTTAA ATTGAGCTAC GACGTAACCG ACAACATCCG TGGTTATGTT
GAAGGTAAGT ACGCACGTAC TCGCTCGACT AATGTTGGTC AGCCTGCGTT TTTCTTCTTT
GAAAGCGAGG CAGATGCCAT CACTATCCAA AACGATAACC CGTATGCAGG AGATGACTTG
CTAGCCCTTA TGGGTGCAAA TAATCTGACT AAAATTACTA TCGACCGGAT GTTGACTGAT
GTTGGCCGTC GTACAGAAGA TGACGAACGT GAAACCACTG CGTTTGTGGC TGGTCTTGAA
GGTTACATCA ACGATGATTG GGGTTTTGAA ACCTACATCA CGCGTGGTGA AACCAAGCTT
GAGCGTGCCA ACAAGAATAA CCTTGTACTG GCCAACTTCT ATAATGCTGT AGATGCGGTT
GAAGCTGACG ACGGCTCAAT TGTCTGTCGT GATACGGCAG CTCAAGCAGC AGGCTGTGTG
CCATTAAACC TACTAGGTGA CGGCGCGCCA AGCGAAGCTG CACGTAACTA CGTTAACACC
ACCTCTGTTG GCAACAGCAC CATTACGCAA ACTGTTGTCG GCGGCTCAGT CAACAACTCT
GGTATATATG AATTACCAGC GGGCTATGTG GGTTTTGCCG CGGGTATTGA ATACCGCAAA
GAAGAAAGCG AAATTGAAGA GCCAGACAAC GCTGAAGGTA CGTTCTTCAA CGTATTAGGC
GAAGATAAAG GCGACTTCGA TGTTAAAGAA GCTTACGTAG AGTTTTCAGC GCCTTTGCTA
ACCGACCTAC CAGGTATTCA AGATCTGAAC TTTGAAACCG CACTGCGTAT TGCTGACTAC
AGCACTATCG GTAATGCAAA AAGCTGGAAG CTAGGTCTAG ACTGGCAAGT GTATGAAGAC
TTACGCGTTC GAGCGACCCA CTCCTCAGCC CTACGCGCAC CTAACATCAG TGAACTGTAC
GGTGAAGCGA GCCAAACGTT TTTCAGTATT GACGATCCTT GTAAAACGTC TGAGCTAGGT
CAATTGGCTG ACGCTTCAAC GCGCACATCA AACTGTGCCG CTTTAGGCGT GCCGGCTGAT
TTTGATTCAG ACTATGACTC AGCCAGAATT GAAGGCGAGC AAGGCGGTAA CATTAACCTT
CGCGCTGAAG AATCAAAAAG TACTACAGTC GGCGTGGTTT ATCAGCCGGC TTACCTTGAA
GGTTTTGTGG CCACCGTTGA TTACTGGAAA ATTGAATTGA CTGACGCTAT TTCTTCAGTT
GATTCGCAAA CCATTCTTGA TCGCTGCGTT GATAACACGA GCGGCGTCAG CAATGATTAC
TGCTCGCTTA TTACCCGTGA TGCAAGTGGT GAAATATCAC AAATTAGAAG CTTCTCCCTT
AACCTTTCAG GTCAAGATGC ATCGGGTGTG GATTTCGAAC TTGGCTATGA CTTTGATGCG
CTTGGCGGTT CATTCAAAAC TAACCTAATT GGTACGTACC TGATTGAGCG TAAAGAGTAT
CCGTTCCAAG AAGATACGTC TGATTTTGTT GAATATGCTG GTACTGCAGG TGAATCAGAG
TGGCAAGGTA TGTTAAGCAT GAGCTACATG GTTGATGCAT GGCAAGCTGG TATCAAAACC
CGTTATCTAG AGCGTGTGAG CATCTATGAC AACCAAGAGC TCGCGGTTAA CCCTAACCGT
AGCTCCTTGA TGGAATATGG CTCGTACGCG ATTTCAGATG TCACTGTAGG CTACGCATTT
GAAAACGGTA TATCACTGAC TGTTGGCGTA GACAACGTAT TCAACCGTGA CCTTCCATTT
GGAACGACTG GCACAGGCGA AAAGACTGGT GCATATGAAA ACATCGGTCG CTTCGGTTAC
ATAACACTGT CATACGCGAT GTAA
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| Protein sequence | MHKITQAVKL ALLGGSIVMT NSALAQQSDD AANSVEKIQI TGSRILREGA IAPSPVTVLS
GESLLNTGAM NIGEALNELP ALASTYSLSN SGQFIGTAGL SLLDLRGMGT ERTLVLVNGK
RHVASSAGTS SVDTNTIPTS WIERVEIITG GASAVYGADA VTGVVNFILK DKIEGLQVSA
TKGYADNHDY SNDKYSFSYG TNFNDDRGNI AFSVEHSSQE SLNALDNPWT STSFRNLANT
AQNDDNRDSL DVPDDIYTPN AGIYALSNAG TFAIGDDYYS FNPNGSVRDV YLGDNVDGIA
CENCDFINLN QFSELQPEFD RTNYNLKLSY DVTDNIRGYV EGKYARTRST NVGQPAFFFF
ESEADAITIQ NDNPYAGDDL LALMGANNLT KITIDRMLTD VGRRTEDDER ETTAFVAGLE
GYINDDWGFE TYITRGETKL ERANKNNLVL ANFYNAVDAV EADDGSIVCR DTAAQAAGCV
PLNLLGDGAP SEAARNYVNT TSVGNSTITQ TVVGGSVNNS GIYELPAGYV GFAAGIEYRK
EESEIEEPDN AEGTFFNVLG EDKGDFDVKE AYVEFSAPLL TDLPGIQDLN FETALRIADY
STIGNAKSWK LGLDWQVYED LRVRATHSSA LRAPNISELY GEASQTFFSI DDPCKTSELG
QLADASTRTS NCAALGVPAD FDSDYDSARI EGEQGGNINL RAEESKSTTV GVVYQPAYLE
GFVATVDYWK IELTDAISSV DSQTILDRCV DNTSGVSNDY CSLITRDASG EISQIRSFSL
NLSGQDASGV DFELGYDFDA LGGSFKTNLI GTYLIERKEY PFQEDTSDFV EYAGTAGESE
WQGMLSMSYM VDAWQAGIKT RYLERVSIYD NQELAVNPNR SSLMEYGSYA ISDVTVGYAF
ENGISLTVGV DNVFNRDLPF GTTGTGEKTG AYENIGRFGY ITLSYAM
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