| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4162 |
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| Symbol | |
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| ID | 4175951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 5009172 |
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| End bp | 5011073 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057198 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_663715 |
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| Protein GI | 109900460 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTTTA GGCCGTTGCG TTTGTGTTTT GTCGTTTTCT TCGTTATCGC TTGTATTTCA
TGCACAAGCA AACCATCAAT CGATCCTAAA ATTGAAGCCT TAGTTGCGCA AAAACTGATG
CTCGATATTC GCTATTTCTG TGATGAAAAC GAGCTTGATG CAACCACACA GCGCTGCACT
ACACCTGTCA CCACGTTACC CGATGACCTT AAAGAAATGA TTGCTGACAC AGGTGTAGGC
GGCATAATCT TATTTGCCAA TAACTTGGTC GACACAGAAC AAATGCTTCG CCTGAATCGT
GACTTGCAAG CAGCCTCAGC CAGTGGCGGG CACTCTCCAC TGCTTATCTC TATCGATCAA
GAAGGCGGGC GCGTGGTGCG CATCCCGCAA AATATTAGTA CTGCATTTAG CGGCAATATG
GCCATTGGTG CCACATACGC CGAACATGGA ACACACTTTG CCACGCTTAG CGGTGATGTG
ATTGCTAAAG AGTTAGCCGT ACTGGGTTTT AACGTTAATT TTGCTCCTTC AGTTGATGTA
AACGTCAATC CAGAAAACCC TGTGATAAAC GTGCGCTCAT TCGGGGAAGA CCCACAAGTG
GTGGCTGAAC TGGGATTAGC TCAAATGCAG GCAATGCAAC AAAACGGCAT TATTGCTGCG
CTGAAACACT TTCCTGGGCA CGGGGATACC AGCACCGATA GTCACTCGGG CTTACCCTTG
GTTGAACATG ACTTACACAA AATAAAAGCG GTAGATTTAG CGCCATTTCA ATACGCCATT
GATAATGGCG ATCCGGGCAT GATCATGACG GCACATATTC AATACCCAGC CCTTGATAGC
TCAACATTTA CTGCCACTGA CGGCAGCAAG ACAATACTAC CGGCTACCAT GTCTCGGGCA
ATTTTAACCG ACTTGCTCAG AGACCAAATG GGCTTTCGGG GCGTGATCAT CACAGATGCG
TTAGATATGG CCGCCATCGC CCATTTTTAT GAGCCTACCC AAGCGGTATT GCAAACATTC
AAGGCGGGTA CTGACATCGC ACTAATGCCA CTGGCTATTC GCACTGCACA GGACATTCCT
AAGCTTAAAA AAATGATTGC TGATCTAGCT TATGCCGTTC AAATTGGCGA CGTAACGTTA
GCTGAAATAG AGACGTCAGT AGCGCGTATT CAAACCTTAA AACACAATTA TATTCCGTCT
AATACTGCCC AGTTATCCCC AGCCAAAGCA CTCGCTCGGG CGCAAAGTAT ATTGGCTGCG
CCTGCTCATC TAAAAATAGA GCAAGACTTA GCGGATAACG CCATTGTGGC GATTAAAAAT
CAGCAAGCAT GGCCGATAAG CCAATCCACT AAGCGCATTC ATCTCGTCAT GCCAGACAAG
AGTAAATGCA TGGCCATGAC AACTGCACTA ACTGATGCAC TTAACACATT TGACCCACGG
CCTGAACTGA CAATGAGCTG TGCCAGCTTA GTGAGCGAGC CAACAGATAA CCTTCTTGCC
CTACAGCGTG ACGCACAATT AGTGATTTAC ACCGATATTA CCCCGCAGCA AAGCTTGGTT
GAAATGGGGG GAATGGACGA TATTATTGAT TGGCGCTCAA GACCGAATAA AGAAGCGCTG
GATGCCAAGC TTCTCACCTT ACTGAAAGAC ATTAAACCCC ATCAAAAATC GCTTATGGTG
AGTATGCGCA CCCCTTATGC AGTGACCCAG TACGCAGATT ATCTGGATGG CATTTTGGCG
ACCTTTGCTT ATAACACCCA AGTTACTGAG CAATTAGATG AAAACGGAGC AGCCCGTGCC
CACTACGAAG GTCCTATTTA TCGCGCTTTG GCCAATATTC TGTTCGGTAA TCAACAGGCC
TCGGGATCGC TGCCAGTTAG CATTGGTAAG ATTCAGCATT AA
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| Protein sequence | MGFRPLRLCF VVFFVIACIS CTSKPSIDPK IEALVAQKLM LDIRYFCDEN ELDATTQRCT
TPVTTLPDDL KEMIADTGVG GIILFANNLV DTEQMLRLNR DLQAASASGG HSPLLISIDQ
EGGRVVRIPQ NISTAFSGNM AIGATYAEHG THFATLSGDV IAKELAVLGF NVNFAPSVDV
NVNPENPVIN VRSFGEDPQV VAELGLAQMQ AMQQNGIIAA LKHFPGHGDT STDSHSGLPL
VEHDLHKIKA VDLAPFQYAI DNGDPGMIMT AHIQYPALDS STFTATDGSK TILPATMSRA
ILTDLLRDQM GFRGVIITDA LDMAAIAHFY EPTQAVLQTF KAGTDIALMP LAIRTAQDIP
KLKKMIADLA YAVQIGDVTL AEIETSVARI QTLKHNYIPS NTAQLSPAKA LARAQSILAA
PAHLKIEQDL ADNAIVAIKN QQAWPISQST KRIHLVMPDK SKCMAMTTAL TDALNTFDPR
PELTMSCASL VSEPTDNLLA LQRDAQLVIY TDITPQQSLV EMGGMDDIID WRSRPNKEAL
DAKLLTLLKD IKPHQKSLMV SMRTPYAVTQ YADYLDGILA TFAYNTQVTE QLDENGAARA
HYEGPIYRAL ANILFGNQQA SGSLPVSIGK IQH
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