Gene Patl_4154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4154 
Symbol 
ID4175943 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4994892 
End bp4996373 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content44% 
IMG OID638057190 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_663707 
Protein GI109900452 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGTTA AACGCCTATT TGGTAATACC ACTGCGACTT GGATCATTAT TTCCATCATA 
GTGGTGGGCA TCATAGGGAC AAATCTATCC ATTGCATTAA ACACGGTTAA TCAGCTTTCT
ACCGTGCAAA CCGACCTAGA TAAAACCAGC AATATTATTG TACGCCTCGA AAGCCTGCAT
TTGTCCGTAG TGGTCGCCGA ATCAGGCCAG CGTGGGTATC TATTGACCGA GTATGAAGAA
TACCTCAACC CTTATCATGC TGAATTGCAG ACCCTTGATG AGAAAATTGC GTTAGTCAAA
AACATCAAAT CAGGTGTAGC GGGGCAAAAA GAGCGTATTG ACGAACTGCT GATACTCGTA
AATGAGAAAA TCACAGAGCT CACCTCCACA GTGGATTTAG CCTTAGAAGA TCGAGAGAAG
TCGGCGCTTA GGCAGATTAT GACCAACCGA GGGCGTGATC TTTACCGTGA AATCCGTAAA
TCTATGCAGC AGTTAATCGA CAGTGAATAT CAGCATAGGC AAGCACTGTA CACTCAGTTA
AAAAGAATAC AGCGCGACGC CAAAGTCAAC TTTGGGGTAT CGGCTATCAC TAGCGGTTTG
TTGGTTATCG GCATGTTTTT AATGGCTCGC ATTAATTTAC GAATTAGCAA TCGCTATCAA
GACGACCTTG AAGAGCAGAA TGAGTCATTG CAGGAGAAGG TCGATCTGCG CACTCAAGAG
TTAACCGTCT ACTCAGAGGA ACTCAGCCGA AGTAACCGAG AGTTAGAAGA TTTTGCGTTT
GTCGCCTCCC ATGACTTACA AGAGCCTTTG CGAAAAATTC AAGCCTTCAG CGATCGCCTG
ACCACTATTT ATAAAGACCA ATTGGACGAG CGCGGTGTCG ATTACATTAA GCGAATGACC
ACAGCTGCTT TTCGAATGTC GACTTTAATT AACGACCTGC TAGAGTTTTC CAGAATTACC
ACACGTGGAA AAGAGTTTGT TGAGGTTGAA TTAAACAGTG TCCTAGATGA AGTCTTAAAC
GACTTAGAAA TTGCCATTGC TGAGACAGAT GCGCAAATCG ACGTCGCTCC ATTACCAAAA
GTGTGTGCAG ATCCTAGTCA GATGTATCAG TTGTTTCTTA ACGTATTATC AAACGGATTA
AAGTTTCACA AAACGGACGT TGCACCTGTG ATCACTGTAT CAGTTGAGCA AAAAGACTTG
CGTGATGAAC TTCAACATGT TGATGTGCCA AGTTGCATTG TGACGATCAA AGATAATGGT
ATCGGTTTTG AGCAAACCTA TGCGGATAAA ATATTTTCAC CTTTTCAGCG ACTTCATGGT
CGCACAGCGT ACAAAGGAAC GGGAATTGGT TTGGCGGTGT GTCGCCGCAT TGTTGAGCGT
CATGGTGGTA CCATCACAGC GCTAAGTAGT CCCGATGAAG GGGCTGAGTT TACCATCACC
TTGCCGATTG ACGCCGTTGT TAACAAATAT ATGGGAGAGT AG
 
Protein sequence
MHVKRLFGNT TATWIIISII VVGIIGTNLS IALNTVNQLS TVQTDLDKTS NIIVRLESLH 
LSVVVAESGQ RGYLLTEYEE YLNPYHAELQ TLDEKIALVK NIKSGVAGQK ERIDELLILV
NEKITELTST VDLALEDREK SALRQIMTNR GRDLYREIRK SMQQLIDSEY QHRQALYTQL
KRIQRDAKVN FGVSAITSGL LVIGMFLMAR INLRISNRYQ DDLEEQNESL QEKVDLRTQE
LTVYSEELSR SNRELEDFAF VASHDLQEPL RKIQAFSDRL TTIYKDQLDE RGVDYIKRMT
TAAFRMSTLI NDLLEFSRIT TRGKEFVEVE LNSVLDEVLN DLEIAIAETD AQIDVAPLPK
VCADPSQMYQ LFLNVLSNGL KFHKTDVAPV ITVSVEQKDL RDELQHVDVP SCIVTIKDNG
IGFEQTYADK IFSPFQRLHG RTAYKGTGIG LAVCRRIVER HGGTITALSS PDEGAEFTIT
LPIDAVVNKY MGE