Gene Patl_4149 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4149 
Symbol 
ID4175938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp4987494 
End bp4988066 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content47% 
IMG OID638057185 
Productputative lipoprotein 
Protein accessionYP_663702 
Protein GI109900447 
COG category[S] Function unknown 
COG ID[COG2930] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTACA AATCAATACT TTTTGGCCTT GTGGCCGCGG TTTCACTTCT ATCTGTCGGT 
GGTTGCTCTA CTACAACACA AGCAACTGTC ACTCAAAAGC GTCAGGCTGT TCAAACCATG 
AACGATAAGG TGTTAACAGA GTTGTTTGCA TTAAAGCCTA GTGTGCGTTC TCAAATAAAT 
AGCGCTCCTG GCTATGCGGT ATTCGACAAC GCGAACGTGA ATCTTATTCT AGCTAGTTTT 
GGCGGCGGTT ATGGCGTGGT AACGGACAAT CAAACCGGCC AGAAAACCTA TATGAAAATG 
GCAGAGGTGG GGCTAGGTCT AGGCGCTGGT GTTAAAGACT TTCGCGCCGT TTTTGTTTTC 
CATAACGAAG CGGTCATGTC GCGGTTTGTT GAGGAAGGTT GGGCGTTTGG TGCCCAAGCT 
GATGCTGCCG CCAAGGCCGG CGATAAAGGT GTAGCTAAAG GCGGAGAAGT GACCGTAGAT 
AACATCACTA TTTATCAGTT AACGGAGAGT GGATTGTCTT TACAGGCGAC GGTAAAGGGT 
ACTAAGTACT GGAAAGACAA CGAACTTAAC TAA
 
Protein sequence
MQYKSILFGL VAAVSLLSVG GCSTTTQATV TQKRQAVQTM NDKVLTELFA LKPSVRSQIN 
SAPGYAVFDN ANVNLILASF GGGYGVVTDN QTGQKTYMKM AEVGLGLGAG VKDFRAVFVF 
HNEAVMSRFV EEGWAFGAQA DAAAKAGDKG VAKGGEVTVD NITIYQLTES GLSLQATVKG 
TKYWKDNELN