| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4142 |
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| Symbol | |
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| ID | 4175931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4978485 |
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| End bp | 4979639 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638057178 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_663695 |
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| Protein GI | 109900440 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.93898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCACTTAA TTATTCGCTC TTGTAAAAAC GCCGTTGTTG TTATGTCATT ATTATTGACC
TATGCCATAT TCGTGCCCGC CGTCTTCGCT CAGGAAAATA CAACTGAAGA GCCTCTAATG
ACGCAGCCGT TGGATGTATG GGCAGATGTC ACTCATTTGT GGCACAACGT TGTGATGGCG
TTACCTATGC TCACGCTGGG GTTGGTATTC TTTATTATTT GTTATGCCCT CGCGAGGCCC
GTATCTACTT TGCTTGTAAG GCCTATCGGA TACGTAAGTC AGAGTGAATT GATTAGGCTT
GTGACGCGGC GCACTATCAG CCTGCTAATT ATTTTACTTG GTCTGTATGT ATTCTTAAGA
TTTGCAGGCT TAAGTGAATT TGCTATCGCG ATTGTCAGCG GCACGGGAGT CATGGGCTTA
ATTCTTGGGT TCGCGTTTCG TGATATCGCG GAGAACTTTA TTTCGAGTTT GCTGCTAAGC
GTGCAAAAGC CCTTTAAAAT TGACGATGTC ATTGAGGTAC AGGGGCAGTT AGGGATTGTA
AAGCAAGTAA CAGCAAGGGC GACGACTTTA GTCGACTTCG ATGGTAATCA CATTCAAATT
CCCAATGCGA CTATTTATAA AAATATTATA CGTAATCTCA CTGCCAACCC GAAAATGCGA
GGCAAGTTCA CTATCGGTAT TGGATATGAT TCCAGTATTT TGGAGGCTCA ACAATTGGCC
ACAAAGGTGC TTAGCTCGCA ACCTACCATT TTACAAGACC CCGAGCCTCA AGTATTGGTA
GACGAATTAG GCTCATCTAC GGTGAACCTA AAGGTCTATT TTTGGATCGA TGCTCAGCAA
TATAGCCTGC TTAAAGTGTC TTCAATGTTA ATGCGCTTAA TCATGCGCGA ATTTGAAAGA
AACAATATCA GTATGCCAGA CGATGCGCGT GAGATAATCT TCCCTCAAGG TGTGCCAGTT
CATCAAATAT CATCACAGGA GAGTGGCTTG ACTGATGAAC CTCAAGCCTT ACGCTCTTTG
CCCGTTAACA AAGAAGCCAT TGAGCAAGAT AGCGATGCCA TCGAGCATCA AGATGATTTA
AGCAGCGACA CCCATGACAT ACGCGAGCAA GCAAAGCAGG CTCGTGATCC AGAGCAAGGG
CAAAACATTC TTTGA
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| Protein sequence | MHLIIRSCKN AVVVMSLLLT YAIFVPAVFA QENTTEEPLM TQPLDVWADV THLWHNVVMA
LPMLTLGLVF FIICYALARP VSTLLVRPIG YVSQSELIRL VTRRTISLLI ILLGLYVFLR
FAGLSEFAIA IVSGTGVMGL ILGFAFRDIA ENFISSLLLS VQKPFKIDDV IEVQGQLGIV
KQVTARATTL VDFDGNHIQI PNATIYKNII RNLTANPKMR GKFTIGIGYD SSILEAQQLA
TKVLSSQPTI LQDPEPQVLV DELGSSTVNL KVYFWIDAQQ YSLLKVSSML MRLIMREFER
NNISMPDDAR EIIFPQGVPV HQISSQESGL TDEPQALRSL PVNKEAIEQD SDAIEHQDDL
SSDTHDIREQ AKQARDPEQG QNIL
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